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Extensions to the R statistical programming language
R packages are extensions to the R statistical programming language. R packages contain code, data, and documentation in a standardised collection format
R_package
Programming language for statistics
data analysis, and data science. The core R language is extended by a large number of software packages, which contain reusable code, documentation
R_(programming_language)
Storage location for software packages
a weakness in the R contributed-package system: CRAN supports this kind of automated testing of contributed packages, but packages contributed to CRAN
Software_repository
Antimicrobial resistance data analysis package for R
AMR is a free and open-source package for the R programming language, designed to simplify the analysis of antimicrobial resistance (AMR) data. It has
AMR_(R_package)
Motor vehicle
to some collectors. 1994 also saw the introduction of the "R" package, a sport-themed package with Bilstein shocks, stiffer sway bars, retuned springs,
Mazda_MX-5_(NA)
Enclosure or protection of products for distribution, storage, and sale
Packaging is the science, art, and technology of enclosing or protecting products for distribution, storage, sale, and use. Packaging also refers to the
Packaging
Software for handling software deployment
A package manager, or package management system, is software that supports installing, upgrading, configuring, and removing software for the host system
Package_manager
Quantitative Discourse Analysis Package (qdap) is an R package for computer assisted qualitative data analysis, particularly quantitative discourse analysis
Quantitative Discourse Analysis Package
Quantitative_Discourse_Analysis_Package
as area-under-the-curve, Brier score or net benefit. PredictABEL: an R package for the assessment of risk prediction models. survIDINRI: IDI and NRI
Net reclassification improvement
Net_reclassification_improvement
Graphical user interface for the R programming language
It also displays the underlying R code that runs each analysis. Rcmdr can be installed from within R, like any R package. Integration with Microsoft Excel
R_Commander
Collection of R packages
Free software portal The tidyverse is a collection of open source packages for the R programming language introduced by Hadley Wickham and his team that
Tidyverse
R software and development tools
is a list of software and programming tools for the R programming language, including IDEs, package managers, libraries, debugging tools, numerical and
List_of_R_software_and_tools
Statistical analysis package based on R
created open source add-on modules to extend the package's capabilities. These modules are written in the R programming language and make use of the jmv and
Jamovi
Classification algorithm
in R, including ZCA-whitening and PCA whitening but also CCA whitening, is available in the "whitening" R package published on CRAN. The R package "pfica"
Whitening_transformation
Integrated circuit packaging method
Package on a package, or package on package (PoP), is an integrated circuit packaging method to vertically combine ball grid array (BGA) packages for
Package_on_a_package
interpretation of experimental data in the life science R&D GenStat – general statistics package GLIM – early package for fitting generalized linear models GraphPad
List_of_statistical_software
Population genetics software package
published in 2012. A reimplemented version, ADMIXTOOLS 2, was developed as an R package by Robert Maier and colleagues and published in 2023. Most ADMIXTOOLS
ADMIXTOOLS
Statistical model containing both fixed effects and random effects
function (used by R's lme4 package lmer() and the Julia package MixedModels.jl) and direct optimization of the likelihood (used by e.g. R's glmmTMB). Notably
Mixed_model
Statistical method
https://cran.r-project.org/web/packages/vegan/vegan.pdf R package for classical ordination methods https://cran.r-project.org/package=seriation R package for ordering
Ordination_(statistics)
Measure of population differentiation
sequencing (WES) in 2016: Arlequin Fstat SMOGD diveRsity (R package) hierfstat (R package) FinePop (R package) Microsatellite Analyzer (MSA) Archived 2015-03-29
Fixation_index
Statistical measure in mathematical model
car R package ols_vif_tol function in the olsrr R package PROC REG in SAS System variance_inflation_factor function in statsmodels Python package estat
Variance_inflation_factor
Protective packaging
Package cushioning is used to protect items during shipment. Vibration and impact shock during shipment and loading/unloading are controlled by cushioning
Package_cushioning
Motor vehicle
Canada), delivered in advance of standard models. MS-R Package (2007) The MS-R (Motor Sport-Racing) package was designed specifically to enhance the on-track
Mazda_MX-5_(NC)
these statistics to text files, directly from BAM file(s). dupRadar An R package which provides functions for plotting and analyzing the duplication rates
List of RNA-Seq bioinformatics tools
List_of_RNA-Seq_bioinformatics_tools
Statistics models class
mgcv, an R package for GAMs using penalized regression splines. mboost, an R package for boosting including additive models. gss, an R package for smoothing
Generalized_additive_model
Conversion of a matrix or a tensor to a vector
R package version 1.11.0. Azzalini, Adelchi (2017). "The R package 'sn': The Skew-Normal and Related Distributions such as the Skew-t". R package version
Vectorization_(mathematics)
Software used for psychometric analysis
Forrest W. Young. ViSta has not been updated since 2014. Psych is an R package providing routines for personality, psychometrics, and experimental psychology
Psychometric_software
Open-source data science software company
lubridate R package, which makes working with dates and time data types easier. In November 2013, Yihui Xie joined Posit to work on the Shiny package. He created
Posit_PBC
Diagram in computational biology
marray (maPlot), and edgeR(maPlot) Similar "RA" plots can be generated using the raPlot function in the caroline CRAN R package. An interactive MA plot
MA_plot
Term in statistical hypothesis testing
constraints. R package pwr (https://cran.r-project.org/web/packages/pwr/) R package WebPower (https://cran.r-project.org/web/packages/WebPower/index.html) R package
Power_(statistics)
System developer
use it. In this context, a package is a collection of functions written for use in a single language such as Python or R. It may also be bundled with
Package_development_process
Probability distribution with more than one mode
for this including Cluster, and the R package nor1mix. Other distributions The mixtools package available for R can test for and estimate the parameters
Multimodal_distribution
American statistician and computer scientist (1944–2021)
for his book The Grammar of Graphics, which was the foundation for the R package ggplot2. Wilkinson was born on November 5, 1944, to Kirk C. Wilkinson
Leland_Wilkinson
Free library software for graphs
analyzing networks. It is written in C and also exists as Python and R packages. There exists moreover an interface for Mathematica. The software is widely
Igraph
Data visualization grammar for constructing graphics
revised Layered Grammar of Graphics by Hadley Wickham in ggplot2 for the R package, and Vega-Lite which is a visualisation grammar with added interactivity
Wilkinson's Grammar of Graphics
Wilkinson's_Grammar_of_Graphics
Statistics and machine learning technique
prior. R packages ensembleBMA and BMA use the prior implied by the Bayesian information criterion, (BIC), following Raftery (1995). R package BAS supports
Ensemble_learning
Any machine used for packaging
Packaging machinery is used throughout all packaging operations, involving primary packages to distribution packs. This includes many packaging processes:
Packaging_machinery
Satisfaction with the thermal environment
Thermal Comfort Tool for ASHRAE 55, with the Python package pythermalcomfort or with the R package comf. Satisfaction with the thermal environment is important
Thermal_comfort
Biological analysis approach
Ruiz-Arenas, Carlos; Beltran-Gomila, Alba; González, Juan R. (17 January 2017). "MultiDataSet: an R package for encapsulating multiple data sets with application
Multiomics
RevoScaleR is a machine learning package in R created by Microsoft. It is available as part of Machine Learning Server, Microsoft R Client, and Machine
RevoScaleR
File format for spectroscopic data
and working with SPC files. Essential FTIR The Python library spc The R package hyperSpec "A Brief Guide to SPC File Format and Using GSPCIO". Thermo
SPC_file_format
American behavioral scientist
and Francesca Gino. He has also developed two R packages: groundhog, for version-control of R packages, and statuser, designed to simplify statistical
Uri_Simonsohn
Software package for the R language
R packages was created in 2019 and primarily includes tools dedicated to the post-processing of statistical models. As of May 2022, the 10 packages composing
Easystats
R package
dplyr is an R package whose set of functions are designed to enable dataframe (a spreadsheet-like data structure) manipulation in an intuitive, user-friendly
Dplyr
Ensemble learning method
and alternating decision trees R package adabag: Applies Multiclass AdaBoost.M1, AdaBoost-SAMME and Bagging R package xgboost: An implementation of gradient
Boosting_(machine_learning)
Tree-based ensemble machine learning methods
Wiener, Matthew "Classification and Regression by randomForest" R News (2002) Vol. 2/3 p. 18 (Discussion of the use of the random forest package for R)
Random_forest
Nonparametric measure of rank correlation
the R package spearmanCI. One approach to test whether an observed value of ρ is significantly different from zero (r will always maintain −1 ≤ r ≤ 1)
Spearman's rank correlation coefficient
Spearman's_rank_correlation_coefficient
Type of software
aim is to allow users to bring coded qualitative data from one software package to another. Support was initially adopted by Atlas.ti, QDA Miner, Quirkos
Computer-assisted qualitative data analysis software
Computer-assisted_qualitative_data_analysis_software
Broad topic ranging from design conceptualization to product placement
Packaging engineering, also package engineering, packaging technology and packaging science, is a broad topic ranging from design conceptualization to
Packaging_engineering
Branch of statistics
Acute Myelogenous Leukemia survival data set "aml" from the "survival" package in R. The data set is from Miller (1997) and the question is whether the standard
Survival_analysis
Data visualization method
Visualizing Intersecting Sets"". Conway, Jake R; Lex, Alexander; Gehlenborg, Nils (15 September 2017). "UpSetR: an R package for the visualization of intersecting
UpSet_plot
an R package available through CRAN which implements an scalable ordering method for spatial problems which greatly improves accuracy. spNNGP is an R package
Vecchia_approximation
Statistical method for handling multiple comparisons
mulea R package. This method is an empirical, resampling-based approach to calculating the false discovery rate (FDR), which we abbreviate as e F D R {\displaystyle
False_discovery_rate
Franz & Nunn and further developed by Hoppitt, Boogert, & Laland. An R package for performing Bayesian NBDA, STbayes, was published by Chimento & Hoppitt
Network-based diffusion analysis
Network-based_diffusion_analysis
Statistical technique used for feature selection
time-series models. The Annals of Applied Statistics. R package "bsts". R package "CausalImpact". O’Hara, R. B., & Sillanpää, M. J. 2009. A review of Bayesian
Bayesian structural time series
Bayesian_structural_time_series
Package manager and environment management system
package manager for Python and R. At first, Anaconda Python distribution was developed by Anaconda Inc.; later, it was spun out as a separate package
Conda_(package_manager)
Family of statistical methods based on sampling of available data
pdf Angelo Canty and Brian Ripley (2010). boot: Bootstrap R (S-Plus) Functions. R package version 1.2-43. Functions and datasets for bootstrapping from
Resampling_(statistics)
Package management system for Python
alias pip3) is a package manager (package management system) written in Python and is used to install and manage software packages. The Python Software
Pip_(package_manager)
Topics referred to by the same term
radiotelefon) Automatic meter reading, for utility meters AMR (R package), an R package for analysing antimicrobial resistance data Abbingdon Music Research
AMR
Type of delivery service
Package delivery, or parcel delivery, is the delivery of shipping containers, parcels, or high-value mail in single shipments. The service is provided
Package_delivery
Transformation of statistics by limiting extreme values
85, 15, 89, 89, 28, -5, 41]), limits=[0.05, 0.05]) R can winsorize data using the DescTools package: library(DescTools) a<-c(92, 19, 101, 58, 1053, 91
Winsorizing
Regression method in econometrics
software packages feature MIDAS regressions and related econometric methods. These include: MIDAS Matlab Toolbox midasr, R package midasml, R package for High-Dimensional
Mixed-data_sampling
Integrated development environment for R
import (e.g. SPSS, Stata, CSV and Excel through package `rio`) Plot preview and browsable history R package management Workspace browser GUI dialogs for
RKWard
Car model
the S/R was a response to the increased presence and success of "tuner" models worldwide over the previous decade. The optional S/R package added a
Ford_Escort_(North_America)
Statistical estimation framework for causal inference
nuisance parameters. The original implementation is available as the R package SuperLearner. Recent machine learning platforms like H2O AutoML implement
Targeted maximum likelihood estimation
Targeted_maximum_likelihood_estimation
Diagram with a treelike structure
2022. Retrieved October 20, 2018. Galili, T. (2015). "dendextend: an R package for visualizing, adjusting and comparing trees of hierarchical clustering"
Dendrogram
Algorithm for trading indivisible items
Matchings in R: Package matchingMarkets" (PDF). Vignette to R Package MatchingMarkets. "matchingMarkets: Analysis of Stable Matchings". R Project. 12 January
Top_trading_cycle
Yu G, Smith DK, Zhu H, Guan Y, Lam TT (January 1, 2017). "ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates
List of phylogenetic tree visualization software
List_of_phylogenetic_tree_visualization_software
Field in statistics pertaining to establishing cause and effect
Wayback Machine. R package [8] Python package [9] R package [10] Archived 2019-09-25 at the Wayback Machine MATLAB/GNU Octave package [11] There is also
Exploratory_causal_analysis
Chinese software developer
software package Knitr for dynamic report generation in the R programming language, and has also written the book Dynamic Documents with R and knitr
Yihui_Xie
Compilation of software used to produce phylogenetic trees
in R". Bioinformatics. 27 (4): 592–3. doi:10.1093/bioinformatics/btq706. PMC 3035803. PMID 21169378. Liu L, Yu L (April 2010). "Phybase: an R package for
List of phylogenetics software
List_of_phylogenetics_software
Statistical analysis technique
conjecture holds. amanpg - R package for Sparse PCA using the Alternating Manifold Proximal Gradient Method elasticnet – R package for Sparse Estimation and
Sparse_PCA
Measurement of population polymorphism
inter-population analyses. Available for Windows. Variscan R package PopGenome pixy R package QSutils Nei, M.; Masatoshi Nei; Wen-Hsiung Li (October 1,
Nucleotide_diversity
with popular CRF implementations (C++) mdlp in the R package discretization Discretize in the R package RWeka Density estimation Continuity correction Clarke
Discretization of continuous features
Discretization_of_continuous_features
Data scientist
company. He is a co-author of the tidytext R (programming language) package and the O'Reilly book, Text Mining with R. Robinson has previously worked as a chief
David G. Robinson (data scientist)
David_G._Robinson_(data_scientist)
presented in the R implementation section below. References for the R package are available online as well as an unpublished review of the R package results.
Peirce's_criterion
Statistical device
MSc course material Galbraith plots are available within the metafor package in R, along with various other diagnostic and summary plots. MIX 2.0 Software
Galbraith_plot
Iterative decision analytic framework
Corporation has developed CARS for exploratory modeling and the sdtoolkit R package for scenario discovery. The EMA Workbench, developed at Delft University
Robust_decision-making
Statistical technique
1201/9781315369983. ISBN 9781498731775. Ripley, Brian (2022-01-13). "MASS R package manual". R Package Documentation (rdrr.io). Details. Retrieved 2022-03-17. Borcard
Correspondence_analysis
Discrete probability distribution
Pólya distributions, methods for which are described in (Minka 2003). The R package VGAM through the function vglm, via maximum likelihood, facilitates the
Beta-binomial_distribution
Hidden Markov model algorithm
forward procedure momentuHMM R-Package provides tools for using and inferring HMMs. GHMM Library for Python The hmm package Haskell library for HMMS, implements
Forward_algorithm
Time series statistical test
and Stock (1996). R: package forecast function ndiffs handles multiple popular unit root tests package tseries function adf.test package fUnitRoots function
Augmented_Dickey–Fuller_test
Mass spectrometry technique that can visualize the spatial distribution of molecules
Another free statistical package for processing imzML and Analyze 7.5 data in R exists, Cardinal. SPUTNIK is an R package containing various filters
Mass_spectrometry_imaging
Seventh generation of the Corvette sports car
Spectra Gray grille and vents, C7.R graphics, and the Z07 Performance Package with carbon ceramic brakes. The package is available in either Black or Corvette
Chevrolet_Corvette_(C7)
Implementation of the S programming language
FinMetrics software package was developed for econometric time series analysis. Due to the increasing popularity of the open source S successor R, TIBCO Software
S-PLUS
Software project for the analysis of genomic data
components are distributed as R packages, which are add-on modules for R. Initially most of the Bioconductor software packages focused on the analysis of
Bioconductor
Graph used to visualize evolutionary relationships, including reticulation events
can be inferred and visualised with software such as SplitsTree, the R-package, phangorn, and, more recently, Dendroscope. A standard format for representing
Phylogenetic_network
Mathematical index used in Bayesian statistics
"Bayesian Reporting Guidelines". easystats.github.io/bayestestR. Retrieved 26 November 2021. bayestestR — an R package for computing Bayesian indices
Probability_of_direction
File format for scientific data
Interface to NetCDF Datasets. R package version 1.7-3. https://cran.r-project.org/package=RNetCDF https://cran.r-project.org/package=ncdfCF http://www.hdfql
NetCDF
Reference model for measuring drug combination effects
with Monte Carlo simulation, as implemented in the R package MDR.[clarification needed] Greco, W.R.; Bravo, G.; Parsons, J. (1995). "The Search for Synergy:
Loewe_additivity
Combinatorial optimization problem
Java-based Quadratic Assignment Problem Solver https://CRAN.R-project.org/package=qap - R package qap: Heuristics for the Quadratic Assignment Problem https://apps
Quadratic_assignment_problem
Measure of linear correlation
related to principal components analysis for multivariate data. R's statistics base-package implements the correlation coefficient with cor(x, y), or (with
Pearson correlation coefficient
Pearson_correlation_coefficient
Data visualization
analyses. In addition, an open-source implementation is available in the R package blandPower, which provides functions to estimate power curves, determine
Bland–Altman_plot
Classification problem where multiple labels may be assigned to each instance
Casalicchio, Clemens Stachl, Bernd Bischl. Multilabel Classification with R Package mlr. The R Journal (2017) 9:1, pages 352-369. Madjarov, Gjorgji; Kocev, Dragi;
Multi-label_classification
Relative measure of dispersion expressed as the ratio of standard deviation to the mean
Tests for the equality of coefficients of variation from multiple groups. R package version 0.2.0. Hendricks, Walter A.; Robey, Kate W. (1936). "The Sampling
Coefficient_of_variation
package manager systems, categorized first by package format (binary, source code, hybrid) and then by operating system family. The following package
List of software package management systems
List_of_software_package_management_systems
Topics referred to by the same term
Entertainment, a former American video game developer Shiny (software), an R package for developing web applications All pages with titles containing Shiny
Shiny
Model-based clustering in statistics
available R package. Many of these are listed in the CRAN Task View on Cluster Analysis and Finite Mixture Models. The most used such package is mclust
Model-based_clustering
Statistical filter
application. R package, 2006. B. Close and I. Zurbenko. kza: Kolmogorov–Zurbenko adaptive algorithm for the image detection. R package, 2016 (https://cran.r-project
Kolmogorov–Zurbenko_filter
Chart for visualizing biodiversity in ecology
curves of different communities can be done using RADanalysis package in R. This package uses the max rank normalization method in which a rank abundance
Rank_abundance_curve
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