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Predictive genomics is at the intersection of multiple disciplines: predictive medicine, personal genomics and translational bioinformatics. Specifically
Predictive_genomics
Statistical measures of whether a finding is likely to be true
predictive value, the two are numerically equal. In information retrieval, the PPV statistic is often called the precision. The positive predictive value
Positive and negative predictive values
Positive_and_negative_predictive_values
Statement about a future event
to predict the life time of a material with a mathematical model. In medical science predictive and prognostic biomarkers can be used to predict patient
Prediction
Discipline in genetics
approaches. Biology portal Hi-C (genomic analysis technique) Cognitive genomics Computational genomics Epigenomics Functional genomics GeneCalling, an mRNA profiling
Genomics
American startup company
Nucleus Genomics is an American biotechnology company focused on reproductive and preventive genetics. The company offers genome health testing for adults
Nucleus_Genomics
for analyzing DNA sequence data, predicting protein sequences and structures, and studying genomic datasets using genomic tools and technologies. These methods
Genome_informatics
Branch of genomics concerned with the genome of an individual
Personal genomics or consumer genetics is the branch of genomics concerned with the sequencing, analysis and interpretation of the genome of an individual
Personal_genomics
Field of biological research
"The NIH Comparative Genomics Resource: addressing the promises and challenges of comparative genomics on human health". BMC Genomics. 24 (1) 575. doi:10
Comparative_genomics
Field of molecular biology
Functional genomics is a field of molecular biology that attempts to describe gene (and protein) functions and interactions. Functional genomics make use
Functional_genomics
Study of genes found in the environment
advance. The field is also referred to as environmental genomics, ecogenomics, community genomics, or microbiomics and has significantly expanded the understanding
Metagenomics
Field of medicine concerning the prediction of future diseases of a patient
Predictive medicine is a field of medicine that entails predicting the probability of disease and instituting preventive measures in order to either prevent
Predictive_medicine
Study of the structure of every protein in a genome
principal difference between structural genomics and traditional structural prediction is that structural genomics attempts to determine the structure of
Structural_genomics
Canadian academic
Working in the medical field, he is the Canada Research Chair in Predictive Genomics of hypertension and cardiovascular diseases. He is Professor of Medicine
Pavel_Hamet
Indian technology company
Strand Life Sciences (formerly Strand Genomics) is an Indian bioinformatics and computational biology company headquartered in Bangalore. It develops software
Strand_Life_Sciences
Study of environmental factors and genetic adaptation
Contrarily, landscape genomics aims to identify changes in the genome directly resulting from local environmental factors. Landscape genomics is a relatively
Landscape_genomics
Numerical score aimed at predicting a trait based on variation in multiple genetic loci
backgrounds, the predictive ability of scores can be improved. Incorporating knowledge of the functional roles of specific genomic chunks can improve
Polygenic_score
Medical model that tailors medical practices to the individual patient
calls for more equitable genomics practices to reduce health disparities. Additionally, while polygenic scores have some predictive accuracy, their interpretations
Personalized_medicine
Machine learning paradigm
across diverse data types. In 2022 Yann LeCun introduced Joint-Embedding Predictive Architectures (JEPA) as a step towards decision making, reasoning, and
Self-supervised_learning
Table layout for visualizing performance; also called an error matrix
{\displaystyle P=TP+FN} and N = F P + T N {\displaystyle N=FP+TN} . In predictive analytics, a table of confusion (sometimes also called a confusion matrix)
Confusion_matrix
Medicine focused on hereditary disorders
personalized medicine, and the rapidly emerging new medical specialty, predictive medicine. Medical genetics encompasses many different areas, including
Medical_genetics
Techniques to study geometric data
most notably in the analysis of geographic data. It may also applied to genomics, as in transcriptomics data, but is primarily for spatial data. Complex
Spatial_analysis
Field of study
Public health genomics is the use of genomics information to benefit public health. This is visualized as more effective preventive care and disease treatments
Public_health_genomics
Genomics-informed framework to personalize radiotherapy dose
genes predictive of cellular response to radiation. RSI has been evaluated across multiple cancer types and clinical cohorts, and serves as the genomic basis
Genomic adjusted radiation dose
Genomic_adjusted_radiation_dose
Genomic Selection (GS) predicts the breeding values of an offspring in a population by associating their traits (e.g. resistance to pests) with their
Genomic_selection
American geneticist (1946–2026)
cell with a synthetic chromosome. Venter founded Celera Genomics, the Institute for Genomic Research (TIGR) and the J. Craig Venter Institute (JCVI)
J._Craig_Venter
Academic discipline focused on effects of social factors on genome activity
Sociogenomics, also known as social genomics, is the field of research that examines why and how different social factors and processes (e.g., social stress
Sociogenomics
Science of changing the traits of plants
taxonomy Double-pair mating EUCARPIA Family based QTL mapping Food security Genomics of domestication International Code of Nomenclature for Cultivated Plants
Plant_breeding
referred to as Computational and Statistical Genetics/genomics. As such, computational genomics may be regarded as a subset of bioinformatics and computational
Computational_genomics
organism. Experts in genomics strive to determine consummate DNA sequences and perform genetic mapping to help understand disease. Genomics involves the study
Genomic_and_medical_data
Health science publishing company
com. 25 Jun 2001. Retrieved 21 May 2014. "Thomson Reuters Launches New Predictive Pharmacology Module As Part Of Its Prous Science Integrity Platform".
Prous_Science
Genomic analysis technique
conformation capture-based technologies) development and the beginning of 3D genomics. Similar to the classic 3C technique, Hi-C measures the frequency (as an
Hi-C (genomic analysis technique)
Hi-C_(genomic_analysis_technique)
Examines sequence information from individual cells
of single cell genomics due to the difficulty of culturing the majority of microorganisms in most environments. Single-cell genomics is a powerful way
Single-cell_sequencing
Conservation Genomics is the use of genomic study to aide in the preservation and viability of different and diverse organisms and populations. Genomics can be
Conservation_genomics
American scientist, inventor and entrepreneur (born 1969)
microfluidics at the interface of cell biology and genomics, led to the development of new tools for single-cell genomics, which he then applied to the creation of
Stephen_Quake
Statistical measure of a test's accuracy
information retrieval systems, the F-score or F-measure is a measure of predictive performance. It is calculated from the precision and recall of the test
F-score
Suite of computer programs
an emphasis on advanced predictive modelling and model selection. JMP Genomics, used for analyzing and visualizing genomics data, requires a SAS component
JMP_(statistical_software)
Statistical model validation technique
quite frequently, MAQC-II shows that this will be much more predictive of poor external predictive validity than traditional cross-validation. The reason for
Cross-validation_(statistics)
American physician
physician in Beverly Hills, California and physician specializing in predictive medicine and genetic testing. He is author of Outsmart Your Genes, a book
Brandon_Colby
Sequencing all the DNA of an individual at once
testing with 23andMe and the Beijing Genomics Institute. This is believed to be the first such public genomics dataset for a whole family. According
Whole_genome_sequencing
American scientist
director of the Icahn Institute for Genomics and Multiscale Biology and chair of the Department of Genetics and Genomics Sciences at the Icahn School of Medicine
Eric_Schadt
Method for analyzing semantic data
"Enhanced probabilistic latent semantic analysis with weighting schemes to predict genomic annotations". Proceedings of IEEE BIBE 2013. The 13th IEEE International
Probabilistic latent semantic analysis
Probabilistic_latent_semantic_analysis
Software program to identify complete gene structures in genomic DNA
structures in genomic DNA. It is a GHMM-based program that can be used to predict the location of genes and their exon-intron boundaries in genomic sequences
GENSCAN
Edible green plant in the cabbage family
Thomas (1 October 2020). "From landrace to modern hybrid broccoli: the genomic and morphological domestication syndrome within a diverse B. oleracea collection"
Broccoli
All genetic material of an organism
chloroplasts with a chloroplast genome. The study of the genome is called genomics. The genomes of many organisms have been sequenced and various regions
Genome
State of steady internal conditions maintained by living things
a very broad range of environmental conditions.[clarification needed] Predictive homeostasis is an anticipatory response to an expected challenge in the
Homeostasis
Genus of grasses
has a BUSCO completeness of 97.1%, and 36,944 protein-coding genes were predicted. List of Poaceae genera Watson L, Dallwitz MJ. (2008). "The grass genera
Beckmannia
Defunct American pharmaceutical company
DNAPrint Genomics was a genetics company with a wide range of products related to genetic profiling. They were the first company to introduce forensic
DNAPrint_Genomics
Species of flowering plant
has a BUSCO completeness of 97.1%, and 36,944 protein-coding genes were predicted. The Plant List, Beckmannia syzigachne (Steud.) Fernald NRCS. "Beckmannia
Beckmannia_syzigachne
Health technology company
collaboration with Memorial Sloan Kettering Cancer Center to advance predictive tumor analysis and, more broadly, clinical decision support. In March
Sophia_Genetics
Medical test to identify changes in DNA or chromosomes
College of Medical Genetics and Genomics (ACMG) recommended that certain genes always be included any time a genomic sequencing is done, and that labs
Genetic_testing
Biomedical and genomics research institute in New York, US
The Icahn Genomics Institute is a biomedical and genomics research institute within the Icahn School of Medicine at Mount Sinai in New York City. Its
Icahn_Genomics_Institute
New Zealand cancer genomics researcher
Cristin Gregor (Cris) Print is a New Zealand academic using genomics and bioinfomatics to research cancer. He is currently a Professor of Molecular Medicine
Cristin_Print
Neuroticism (sensitive/nervous vs. secure/confident). The methods mostly used in genomics of personality traits' studies are two: analytic methods and non-analytic
Genomics of personality traits
Genomics_of_personality_traits
Statistical measure of a binary classification
specificity, likelihood ratios and predictive values from a 2x2 table – calculator of confidence intervals for predictive parameters". medcalc.org. Archived
Sensitivity_and_specificity
Citrus fruit from Southeast Asia
Victoria; López-García, Antonio; Pérez-Román, Estela; et al. (2018). "Genomics of the origin and evolution of Citrus". Nature. 554 (7692): 311–316. Bibcode:2018Natur
Pomelo
diseases outlined by Chau et al. A predictive gene signature is similar to a predictive biomarker, where it predicts the effect of treatment in patients
Gene_signature
field of biological research that utilizes a combination of proteomics, genomics, and transcriptomics to aid in the discovery and identification of peptides
Proteogenomics
Indian genome project
000 Indian genomes in phase 1. The goal of the research is to develop predictive diagnostic indicators for several high-priority diseases and other uncommon
Genome_India_Project
Species of plant
99.5%, and 39,983 and 40,099 high-confidence protein-coding genes were predicted for the two haplotypes, respectively. Fruits of different species of Actinidia:
Actinidia_eriantha
Era of predictive and personalized medicine
The $1,000 genome refers to an era of predictive and personalized medicine during which the cost of fully sequencing an individual's genome (WGS) is roughly
$1,000_genome
Hypertension occurring during pregnancy
tests aimed at predicting pre-eclampsia, though no single biomarker is likely to be sufficiently predictive of the disorder. Predictive tests that have
Pre-eclampsia
Species of fungus
has a BUSCO completeness of 99.6%, and 5,065 protein-coding genes were predicted. List of strawberry diseases Zygotorulaspora florentina (T. Castelli ex
Zygotorulaspora_florentina
Species of fish
24 chromosomes, has a BUSCO completeness of 96.5%, and contains 22,100 predicted protein-coding genes. Annual catches reached 50 tonnes in the 1930s but
Chinese_bahaba
Pattern-recognition performance metrics
a collection, corpus or sample space. Precision (also called positive predictive value) is the fraction of relevant instances among the retrieved instances
Precision_and_recall
information. The order of nucleotides determines the genomics of individuals, and individuals have different genomics . Therefore, people have different characteristics
Personalized_genomics
decision-making on genomics data alone. However, they do encourage the voluntary submission of well-documented, quality genomics data. Both agencies
Toxicogenomics
American computational biologist and data scientist
Washington in Seattle, focused on learning networks from functional genomics data, predicting and designing protein and peptiodomimetic structure and applying
Richard_Bonneau
Species of fish
pseudomolecules. It has a BUSCO completeness score of 98.7% and contains 22,165 predicted protein-coding genes. A second chromosome-level genome assembly was published
Chirolophis_japonicus
American computational biologist
Laboratory. Her research spans algorithms, bioinformatics, genomics, structural biology, and genomic privacy; landmark contributions include the first comparative
Bonnie_Berger
Time period from after the completion of the Human Genome Project to the present day
In genomics, the postgenomic era (or post-genomic era) refers to the time period from after the completion of the Human Genome Project (HGP) to the present
Postgenomic_era
Leguminous tree bearing edible fruit
has a BUSCO completeness of 98.8%, and 30,753 protein-coding genes were predicted. The name derives from Arabic: تمر هندي, romanized tamr hindi, "Indian
Tamarind
Species of carnivorous plant
a BUSCO completeness of 94.98%, and 33,365 protein-coding genes were predicted. It is the most common and widespread suspended aquatic species in Asia
Utricularia_aurea
Method used to analyse protein interactions with DNA
of nucleosomes elucidated, through MNase-seq, can then be used to predict genomic expression and regulation at the time of digestion. Recently, MNase-seq
MNase-seq
Computational analysis of large, complex sets of biological data
Computational biomodeling Computational genomics Cyberbiosecurity Earth BioGenome Project Functional genomics Gene Disease Database Health informatics
Bioinformatics
Epistasis and functional genomics is the study of how genetic interactions, where one gene affects the expression of another gene, can be systematically
Epistasis and functional genomics
Epistasis_and_functional_genomics
American physician and scientist
member of the National Academy of Medicine for his research in genomics and predictive biology, environmental and molecular medicine, and toxicology.
Kenneth_Ramos
Tibetan wild ass
"Chromosome-level genome assembly of the kiang (Equus kiang) illuminates genomic basis for its high-altitude adaptation". Integrative Zoology. 19 (6): 1199–1210
Kiang
American biotechnology company
that assess an individual's risk for developing disease later in life (predictive medicine), identify a patient's likelihood of responding to a particular
Myriad_Genetics
Species of ant
chromosomes. The assembly has a BUSCO completeness of 98.4% and contains 34,352 predicted protein-coding genes. "Tetramorium tsushimae Report". Integrated Taxonomic
Tetramorium_tsushimae
at the intersection of medicine, genomics, and evolution. It focuses on the use of evolutionary knowledge to predict functional consequences of mutations
Phylomedicine
Species of true bug
has a BUSCO completeness of 98.6%, and 15,326 protein-coding genes were predicted. "Sitobion avenae (English Grain Aphid) identification, images, ecology"
Sitobion_avenae
Genus of beetles
chromosomes. The assembly has a BUSCO completeness of 99.3% and contains 12,736 predicted protein-coding genes. Young, Ronald M. (1989). "Euchirinae (Coleoptera:
Cheirotonus
Manteia Predictive Medicine S.A. (initially incorporated under the name "GenInEx S.A.") was a start-up company created in November 2000 as a spin-off of
Manteia_Predictive_Medicine
candidate genes for mania and psychosis: a convergent functional genomics approach. Physiol Genomics 4, 83-91 (2000). Ogden, C.A. et al. Candidate genes, pathways
Convergent Functional Genomics
Convergent_Functional_Genomics
Species of fish
BUSCO completeness score of 96.5%, and 22,312 protein-coding genes were predicted. The stone flounder's diet consists of zoobenthos organisms such as amphipods
Stone_flounder
Mironov AA, Dubchak I (2010). "RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach". Nucleic Acids Research
Αr9_RNA
Species of beetle
pseudochromosomes. The assembly has a BUSCO completeness of 99.3% and contains 14,883 predicted protein-coding genes. "Catalogue of Life, Nadezhdiella cantori (Hope,
Nadezhdiella_cantori
Type of biological prediction
computational barriers are vast, the potential benefits of structural genomics (by predicted or experimental methods) make ab initio structure prediction an
Protein_structure_prediction
Study of microorganisms in soil
Weile; Eissenstat, David M.; Koide, Roger T. (April 2018). "Root diameter predicts the extramatrical hyphal exploration distance of the ectomycorrhizal fungal
Soil_microbiology
Estimated global human population
your father's planarian: a classic model enters the era of functional genomics". Nat Rev Genet. 3 (3): 210–219. doi:10.1038/nrg759. PMID 11972158. S2CID 28379017
Human_population_projections
Protein-coding gene in the species Homo sapiens
Miller JL (1999). "Gene expression in proliferating human erythroid cells". Genomics. 59 (2): 168–77. doi:10.1006/geno.1999.5855. PMID 10409428. Chen Y, McPhie
UBE1C
Fast Company magazine. He is co-author of the book Exploring Personal Genomics from Oxford University Press. Dr. Dudley received a BS in Microbiology
Joel_Dudley
.23.1399S. doi:10.1016/j.cub.2013.05.062. PMID 23850284. "OIST Marine Genomics". marinegenomics.oist.jp. Retrieved 2018-08-22. Liu H, Stephens TG, González-Pech
List of sequenced algae genomes
List_of_sequenced_algae_genomes
(radiation genomics) or to refer to the correlation between cancer imaging features and gene expression (imaging genomics). In radiation genomics, radiogenomics
Radiogenomics
American computer scientist (1953–2020)
which combines Language Technologies and Machine Learning to model and predict genomic, proteomic and glycomic 3D structures. Carbonell also did work in machine
Jaime_Carbonell
Species of fish
BUSCO completeness score of 97.7%, and 23,171 protein-coding genes were predicted. The porcupinefish is circumglobal, found in tropical and subtropical
Spot-fin_porcupinefish
Genus of fishes
with a BUSCO completeness of 97.3%, and 24,102 protein-coding genes were predicted. There are currently five recognized species in this genus: Hypomesus
Hypomesus
Branch of biology
Computational genomics is the study of the genomes of cells and organisms. The Human Genome Project is one example of computational genomics. This project
Computational_biology
Species of bivalve
pseudo-chromosomes. The assembly has a BUSCO completeness of 99.5% and contains 28,699 predicted protein-coding genes. "Meretrix meretrix (Linnaeus, 1758)". Catalogue
Meretrix_meretrix
Wiki about DNA variations
in Man Full Genome Sequencing Predictive Medicine Michael Cariaso (2007-12-17). "SNPedia: A Wiki for Personal Genomics". Bio-IT World. Archived from the
SNPedia
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