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Megacity and union territory of India
Delhi, officially the National Capital Territory (NCT) of Delhi, is a megacity and a union territory of India containing New Delhi, the capital of India
Delhi
Insertions and deletions in a genome
Indel (insertion-deletion) is a molecular biology term for an insertion or deletion of bases in the genome of an organism. Indels ≥ 50 bases in length
Indel
Method for aligning biological sequences
there represents an indel, so add the score for indel: (−1) + (−1) = (−2) The left neighbor also has score −1, represents an indel and also produces (−2)
Needleman–Wunsch_algorithm
Shared protein sequence feature
ensure their reliability. While indels can be arbitrary inserts or deletions, CSIs are defined as only those protein indels that are present within conserved
Conserved_signature_indels
Inhabited locality in Murmansk Oblast, Russia
Indel (Russian: Индель) was a rural locality (an inhabited locality) in Tersky District of Murmansk Oblast, Russia, located beyond the Arctic Circle on
Indel_(rural_locality)
Mutation that shifts codon alignment
framing error or a reading frame shift) is a genetic mutation caused by indels (insertions or deletions) of a number of nucleotides in a DNA sequence that
Frameshift_mutation
next generation paired-end sequencing data, providing a list of candidate indels with quality scores. SOAPsnp is a consensus sequence builder. This tool
Short Oligonucleotide Analysis Package
Short_Oligonucleotide_Analysis_Package
1993 studio album by Vibert / Simmonds
"Path T'Zoar" 13:24 3. "Reservoir" 19:19 4. "(This Can) Robotic" 5:41 5. "Indel Rooks" 11:19 6. "Aple" 4:30 7. "Thing Bounces Back" 12:21 8. "Weirs" 2:00
Weirs_(album)
Family of bacteria
discovery of two conserved signature indels which are specific for the order Bifidobacteriales. The first indel, a 1 amino acid deletion in ribosomal
Bifidobacteriaceae
Phylum of animals having a dorsal nerve cord
chordates, analysis of genome sequences has identified two conserved signature indels (CSIs) in their proteins: cyclophilin-like protein and inner mitochondrial
Chordate
Phylum of worms
presence of 12 clades. In 2019, a study identified one conserved signature indel (CSI) found exclusively in members of the phylum Nematoda through comparative
Nematode
Clade of birds
Witt, C.C.; Braun, E.L. (2013). "Parsimony and model-based analyses of indels in avian nuclear genes reveal congruent and incongruent phylogenetic signals"
Telluraves
Defect in the structure of the heart that is present at birth
insertion/deletion (indel) 3–5% Holt–Oram syndrome, Noonan syndrome, Alagille syndrome Gene panel De novo protein-coding SNV or indel ~10% Mutations in
Congenital_heart_defect
Phylum of Gram-negative bacteria
may have evolved after the divergence of S. ruber. A conserved signature indel has also been identified; this three-amino-acid deletion in ClpB chaperone
Bacteroidota
Clade of mammals consisting of carnivorans and pholidotes
Montgelard, Claudine; Pardini, Amanda T.; Robinson, Terence J. (2007). "Indel evolution of mammalian introns and the utility of non-coding nuclear markers
Ferae
Method of DNA analysis
from insertions or deletions in the sequence, sometimes referred to as indels. Insertions or deletions can occur due to single mutations, unbalanced crossover
Gap_penalty
Indigenous community South Asia
their Lion god, Bhairav dev is their dog god. Some of their other gods are Indel dev, Bada dev, Mahadevel, Tejaji, Lotha mai, Techma, Orka Chichma and Kajal
Bhil
scientists now believe that there is approximately a 3% divergence due to indels on top of the originally believed 1%. Additionally, gene duplication and
The_Myth_of_the_One_Percent
File format for genomic variation data
without white-space. 4 REF The reference base (or bases in the case of an indel) at the given position on the given reference sequence. 5 ALT The list of
Variant_Call_Format
Complete set of nucleic acid sequences for humans
order of 0.1% due to single-nucleotide variants and 0.6% when considering indels), these are considerably smaller than the differences between humans and
Human_genome
Order of egg-laying mammals
van Rheede, Teun (2005). "The platypus is in its place: Nuclear genes and indels confirm the sister group relation of monotremes and therians". Molecular
Monotreme
Subphylum of chordates
weighing some 150 tonnes. Molecular markers known as conserved signature indels in protein sequences have been identified and provide distinguishing criteria
Vertebrate
Genetic mutation not inherited from a parent
typically occurs within the germline, or early in embryonic development. Indels are genetic mutations which consist of two categories, insertions and deletions
De_novo_mutation
Capital and largest city of Amazonas, Brazil
2013). "Revisiting the Genetic Ancestry of Brazilians Using Autosomal AIM-Indels". PLOS ONE. 8 (9) e75145. Bibcode:2013PLoSO...875145S. doi:10.1371/journal
Manaus
Nepalese ethnic group
Sherpa highlanders on the Tibetan Plateau inferred from high-resolution InDel panel and genome-wide SNPS". Forensic Science International: Genetics. 56
Sherpa_people
Clade of birds
Minjares, Uriel; Mirarab, Siavash (6 July 2019). "Phylogenetic Signal of Indels and the Neoavian Radiation". Diversity. 11 (7): 108. Bibcode:2019Diver.
Neoaves
Paraphyletic group of birds
Christopher; Braun, Edward (13 March 2013). "Parsimony and Model-Based Analyses of Indels in Avian Nuclear Genes Reveal Congruent and Incongruent Phylogenetic Signals"
Bird_of_prey
Rare genetic disorder
receptors). KCNQ2 encephalopathy is caused by heterozygous missense or in-frame indel mutations shown to have a dominant negative (DN; >50% reduction of the M-current
KCNQ2 developmental and epileptic encephalopathy
KCNQ2_developmental_and_epileptic_encephalopathy
Clade of birds
3897/vertebrate-zoology.71.e61728. Yuri, T (2013). "Parsimony and model-based analyses of indels in avian nuclear genes reveal congruent and incongruent phylogenetic signals"
Austrodyptornithes
File format for sequence data
to a reference sequence. This format facilitates visual display of SNP/indel calling and alignment. It was first used by Tony Cox and Zemin Ning at the
Pileup_format
Proposed superphylum of bacteria
members are considered to form a clade due to a number of conserved signature indels. Cavalier-Smith calls the equivalent grouping a phylum by the name of Sphingobacteria
FCB_superphylum
Infraclass of birds
PMID 42057148. Yuri, T. (2013). "Parsimony and model-based analyses of indels in avian nuclear genes reveal congruent and incongruent phylogenetic signals"
Palaeognathae
Bacteria that give a positive result in the Gram stain test
between the monoderm and diderm bacteria is supported by conserved signature indels in a number of important proteins (viz. DnaK, GroEL). Of these two structurally
Gram-positive_bacteria
State of Brazil
2013). "Revisiting the Genetic Ancestry of Brazilians Using Autosomal AIM-Indels". PLOS ONE. 8 (9) e75145. Bibcode:2013PLoSO...875145S. doi:10.1371/journal
São_Paulo_(state)
"Divergence between samples of chimpanzee and human DNA sequences is 5%, counting indels". PNAS. 99 (21): 13633–35. Bibcode:2002PNAS...9913633B. doi:10.1073/pnas
Timeline_of_human_evolution
Overview of the genome of Apples
MdMYB1, 15 SNPs and five indels were identified. These indels were very different between the two types of apples. One of these indels is an LTR retrotransposon
Apple_genome
Genus of bacteria
well as all other bacteria by the presence of eight conserved signature indels found in proteins such as adenylate kinase and replicative DNA helicase
Thermus
Clade of marsupials and close relatives
W.; Madsen, O. (2006). "The platypus is in its place: nuclear genes and indels confirm the sister group relation of monotremes and therians". Molecular
Metatheria
State of Brazil
(2013). "Revisiting the Genetic Ancestry of Brazilians Using Autosomal AIM-Indels". PLOS ONE. 8 (9) e75145. Bibcode:2013PLoSO...875145S. doi:10.1371/journal
Pernambuco
Species of flowering plant
Luis; Ollitrault, Patrick (2011). "A nuclear phylogenetic analysis: SNPs, indels and SSRs deliver new insights into the relationships in the 'true citrus
Trifoliate_orange
Domain of organisms
archaeal genomes has also identified several molecular conserved signature indels and signature proteins uniquely present in either all archaea or different
Archaea
Section of plants in genus Saxifraga
(indels) in its DNA sequence aligns this section closely with other Saxifraga sections, such as Mesogyne, Porphyrion, and Cymbalaria. Notably, indel VII
Saxifraga_sect._Cotylea
State of Brazil
2015. Revisiting the Genetic Ancestry of Brazilians Using Autosomal AIM-Indels "Estimativas da população residente nos municípios brasileiros com data
Mato_Grosso_do_Sul
Root of a phylogenetic tree
Van Rheede, Teun (2005). "The Platypus Is in Its Place: Nuclear Genes and Indels Confirm the Sister Group Relation of Monotremes and Therians". Molecular
Basal_(phylogenetics)
Taxon of birds
Chojnowski, J.L.; et al. (13 March 2013). "Parsimony and model-based analyses of indels in avian nuclear genes reveal congruent and incongruent phylogenetic signals"
Passerea
Region in Brazil
(2013). "Revisiting the Genetic Ancestry of Brazilians Using Autosomal AIM-Indels". PLOS ONE. 8 (9) e75145. Bibcode:2013PLoSO...875145S. doi:10.1371/journal
Northeast_Region,_Brazil
substitutions Indels with microhomology at the indel breakpoint junction, indels at polynucleotide-repeat tracts and other complex indels as proportions
HRDetect
Medical condition
VHL disease is caused by the truncation of pVHL by nonsense mutations, indel mutations or splice site mutations. The VHL protein (pVHL) is involved in
Von_Hippel–Lindau_disease
used to detect single base mismatches or small insertions or deletions (indels). Surveyor nuclease is part of a family of mismatch-specific endonucleases
Surveyor_nuclease_assay
Family of bacteria
bacteria through molecular signatures consisting of conserved signature indels (CSIs) and conserved signature proteins (CSPs) that are exclusively present
Thermaceae
Genus of bacteria
corynebacterial genomes has led to the identification of several conserved signature indels (CSIs) that are unique to the genus. Two examples of CSIs are a two-amino-acid
Corynebacterium
Family of birds
Nitish; Minjares, Uriel; Mirarab, Siavash (2019). "Phylogenetic Signal of Indels and the Neoavian Radiation". Diversity. 11 (7): 108. Bibcode:2019Diver.
Columbidae
Biomedical research aid platform
Afshar, Pegah T.; Gross, Sam S. (November 2018). "A universal SNP and small-indel variant caller using deep neural networks". Nature Biotechnology. 36 (10):
PrecisionFDA
Genus of bacteria
bacteria from the family Enterobacteriaceae. Based on conserved signature indels (CSIs) differentiating it from other members of this family, this genus
Pseudescherichia
Class of bacteria
the sequenced genomes have revealed many conserved insertion-deletions (indels) in widely distributed proteins and whole proteins (i.e. signature proteins)
Alphaproteobacteria
Genus of bacteria
indels which are uniquely found in members of the phylum Chlorobiota (formerly Chlorobi) and are thus characteristic of the phylum. The first indel is
Chlorobium
Botanical classification of the genus Citrus
Luis; Ollitrault, Patrick (2011). "A nuclear phylogenetic analysis: SNPs, indels and SSRs deliver new insights into the relationships in the 'true citrus
Citrus_taxonomy
Family of bacteria
MacConkey media, and are capable of reducing nitrate. Four conserved signature indels (CSIs) were identified for this family in the proteins two-component system
Hafniaceae
Genus of bacteria
five conserved signature indels in important proteins, which are uniquely found in members of the genus Rickettsia. These indels consist of a four-amino-acid
Rickettsia
Set of genetic variations in populations
the variome can be the sum of the single nucleotide polymorphisms (SNPs), indels, and structural variation (SV) of a population or species. The Human Variome
Variome
Technique used to identify individuals via DNA characteristics
undetectable by this area, so some kits also add up to 4 Y-chromosomal indels and STRs. Y chromosomal STRs are used in much of the same way as the autosomal
DNA_profiling
Infraclass of mammals in the clade Metatheria
Madsen O (March 2006). "The platypus is in its place: nuclear genes and indels confirm the sister group relation of monotremes and Therians". Molecular
Marsupial
Order of birds
2008-10-30. Yuri, T. et al. (2013) Parsimony and Model-Based Analyses of Indels in Avian Nuclear Genes Reveal Congruent and Incongruent Phylogenetic Signals
Bucerotiformes
Birds from the order Strigiformes
Nitish; Minjares, Uriel; Mirarab, Siavash (2019). "Phylogenetic Signal of Indels and the Neoavian Radiation". Diversity. 11 (7): 108. Bibcode:2019Diver.
Owl
State of Brazil
2013). "Revisiting the Genetic Ancestry of Brazilians Using Autosomal AIM-Indels". PLOS ONE. 8 (9) e75145. Bibcode:2013PLoSO...875145S. doi:10.1371/journal
Rio_Grande_do_Sul
specific tumor. Different types of mutations (e.g. single nucleotide variants, indels, structural variants) can be used individually or in combination to model
Mutational_signatures
Clade of birds
ISSN 2053-7166. Yuri, T.; et al. (2013). "Parsimony and Model-Based Analyses of Indels in Avian Nuclear Genes Reveal Congruent and Incongruent Phylogenetic Signals"
Coraciimorphae
Genus of bacteria
conventional, expensive, metal remediation technologies. Two conserved signature indels (CSIs) have been identified through genomic analysis as exclusive for this
Priestia
Protein-coding gene in the species Homo sapiens
two isoform constructs known for MEGF8, which differ by a 67 amino acid indel. The isoform 2 splice version (analyzed throughout this page) is 2785 amino
Multiple epidermal growth factor-like domains 8
Multiple_epidermal_growth_factor-like_domains_8
Clade of birds
Rebecca; Harshman, John; et al. (2013). "Parsimony and Model-Based Analyses of Indels in Avian Nuclear Genes Reveal Congruent and Incongruent Phylogenetic Signals"
Eurypygimorphae
Order of bacteria
conserved signature indels have been identified which, along with the proteins, serve as molecular markers for the order. The indels are a three-amino-acid
Campylobacterales
Group of bacteria that do not retain the Gram stain used in bacterial differentiation
Acidobacteriota) are uniquely identified by a few conserved signature indel (CSI) in the HSP60 (GroEL) protein. The presence of this CSI in all sequenced
Gram-negative_bacteria
Sequence analysis in social science
a D e l ) {\displaystyle c(a^{\rm {Ins}})=c(a^{\rm {Del}})} ; the term indel cost usually refers to the common cost of insertion and deletion. Considering
Optimal_matching
Group of mammals comprising horses, bats, carnivores, and pangolins, among others
Montgelard, Claudine; Pardini, Amanda T.; Robinson, Terence J. (2007). "Indel evolution of mammalian introns and the utility of non-coding nuclear markers
Pegasoferae
Latin Americans of European or West Asian descent
(2013). "Revisiting the Genetic Ancestry of Brazilians Using Autosomal AIM-Indels". PLOS ONE. 8 (9) e75145. Bibcode:2013PLoSO...875145S. doi:10.1371/journal
White_Latin_Americans
Family of bacteria
Pasteurellaceae genomes have identified large numbers (>20) of conserved signature indels (CSIs) in different important proteins that are uniquely shared by all sequenced
Pasteurellaceae
DNA-editing technology
Conversely, Cas9 cleaves only 3 base pairs upstream of the PAM site, leading to indel mutations from the non-homologous end joining (NHEJ) pathway that can disrupt
Cas12a
Genus of bacteria
genus occurs in the range of 25–37 °C (77–99 °F). Four conserved signature indels (CSIs) have been identified through genome sequence analysis as specific
Lederbergia
American geneticist (1946–2026)
single-nucleotide polymorphisms (SNPs), block substitutions, short and large indels, and structural variations like insertions, deletions, inversions, and copy
J._Craig_Venter
Order of bacteria
from other Gammaproteobacteria by the presence of four conserved signature indels (CSIs) in the proteins tRNA-guanine(34) transglycosylase, lipoprotein-releasing
Legionellales
Order of birds
Nitish; Minjares, Uriel; Mirarab, Siavash (2019). "Phylogenetic Signal of Indels and the Neoavian Radiation". Diversity. 11 (7): 108. doi:10.3390/d11070108
Falconiformes
Clade of birds
William; Reddy, Sushma (13 March 2013). "Parsimony and Model-Based Analyses of Indels in Avian Nuclear Genes Reveal Congruent and Incongruent Phylogenetic Signals"
Strisores
Difference in DNA among individuals or populations
sequence variation (<1 kilobase, kb) includes base-pair substitution and indels. Large-scale structural variation (>1 kb) can be either copy number variation
Genetic_variation
Phylum of bacteria
and Borreliaceae. Molecular markers in the form of conserved signature indels (CSIs) and CSPs have been found specific for each of the orders, with the
Spirochaete
Clade of birds
PMID 18583609. S2CID 6472805. Yuri, T. (2013) Parsimony and model-based analyses of indels in avian nuclear genes reveal congruent and incongruent phylogenetic signals
Accipitrimorphae
Class of bacteria
taxonomic view is justified by the presence of several conserved signature indels (CSIs) that have been found at the different taxonomic ranks. These CSIs
Coriobacteriia
Occurrence in an interbreeding population of two or more discontinuous genotypes
most common form of genetic variation. Small-scale insertions/deletions (Indels) consist of insertions or deletions of bases in DNA. Polymorphic repetitive
Gene_polymorphism
State in Brazil
(2013). "Revisiting the Genetic Ancestry of Brazilians Using Autosomal AIM-Indels". PLOS ONE. 8 (9) e75145. Bibcode:2013PLoSO...875145S. doi:10.1371/journal
Minas_Gerais
Genus of bacteria
signature indels) could serve as a reliable means to distinguish genera such as Solibacillus within the family. 12 conserved signature indels (CSIs) were
Solibacillus
Genus of bacteria
sequences of Sporosarcina species identified eight conserved signature indels (CSIs) that are uniquely present in this genus in the proteins aspartate–tRNA
Sporosarcina
Chinese-speaking ethnoreligious group
between Ningxia Hui and eastern Asian populations revealed by a set of InDel loci". Royal Society Open Science. 7 (1) 190358. Bibcode:2020RSOS....790358Z
Hui_people
Genus of bacteria
sequences from Alkalicoccus species identified nine conserved signature indels (CSIs) that are exclusive for this genus in the following proteins:
Alkalicoccus
DNA testing for endangerment assessment
through population-genomic approaches that rely on the detection of SNPs, indel or CNV. From one side of the coin, data derived from high throughput sequencing
Genome sequencing of endangered species
Genome_sequencing_of_endangered_species
People of Mexico
(December 2017). "Genetic diversity of Mexican-Mestizo populations using 114 INDEL polymorphisms". Forensic Science International: Genetics Supplement Series
Mexicans
Family of bacteria
actinomycetotal genomes have led to the identification of three conserved signature indels which are unique to the order Streptomycetales. The enzyme PBGD contains
Streptomycetaceae
Highly polymorphic DNA region
simply low selective pressure allowing a great number of substitutions and indels (as in the case of mitochondrial DNA D-loop and 16S rRNA). In the case of
Hypervariable_region
Species of bacteria
study of indels in protein-coding genes of the PVC grouping identified a number of biochemical pathways with unusually high numbers of indels in the G
Gemmata_obscuriglobus
Severomorsk-3 Shchukozero Rural localities in Tersky District: Chapoma Chavanga Indel Kashkarantsy Kuzomen Mayak Nikodimsky Olenitsa Pyalitsa Tetrino Varzuga
List of rural localities in Murmansk Oblast
List_of_rural_localities_in_Murmansk_Oblast
Class of roundworms
this class can be identified by the presence of eight conserved signature indels (CSIs) exclusively shared by the class. These molecular markers are found
Chromadorea
Genus of bacteria
sequences. This clade is also strongly supported by a conserved signature indel consisting of a three-amino-acid insertion in isoleucine tRNA synthetase
Actinomyces
INDEL
INDEL
INDEL
INDEL
INDEL
INDEL
INDEL
INDEL
INDEL