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Database of DNA sequencing data
The Sequence Read Archive (SRA, previously known as the Short Read Archive) is a bioinformatics database that provides a public repository for DNA sequencing
Sequence_Read_Archive
Online database from the EBI on Nucleotides
of sequence assembly and other metadata related to sequencing projects. The archive is composed of three main databases: the Sequence Read Archive, the
European_Nucleotide_Archive
File format for sequences and quality scores
@EAS139:136:FC706VJ:2:2104:15343:197393 1:N:18:1 FASTQ files from the INSDC Sequence Read Archive often include a description, e.g. @SRR001666.1 071112_SLXA-EAS1_s_7:5:1:817:345
FASTQ_format
Topics referred to by the same term
National Center for Biotechnology Information's Sequence Read Archive (previously Short Read Archive) Serotonin releasing agent, a type of drug SRA-shooting
SRA
Study of RNA transcripts
processed microarray intensities. Sequence data may be stored in public repositories, such as the Sequence Read Archive (SRA). RNA-Seq datasets can be uploaded
Transcriptomics_technologies
Integer sequence
(sequence A005150 in the OEIS). To generate a member of the sequence from the previous member, read off the digits of the previous member, counting the number
Look-and-say_sequence
Species of fungus
Japan, and previously sequenced C. auris genomes deposited in the National Center for Biotechnology Information's Sequence Read Archive identified a distinct
Candida_auris
American DNA sequence data analysis company
Center for Biotechnology Information would phase out funding for its Sequence Read Archive (SRA), DNAnexus said it was working with Google Cloud Storage to
DNAnexus
Database branch of the US National Library of Medicine
PubChem: A database of freely accessible chemical information. Sequence Read Archive: The SRA stores sequencing data from the next generation of sequencing
National Center for Biotechnology Information
National_Center_for_Biotechnology_Information
Virus Discovery Platform
available sequencing datasets (20.4 petabytes of raw data) in the Sequence Read Archive (SRA) in only 11 days and a computing cost of US$23,900. This analysis
Serratus_(virology)
Web archive
archive.today (also known as archive.is, among other domains) is a web archiving website that saves snapshots on demand. It has support for JavaScript-heavy
Archive.today
Computational analysis of large, complex sets of biological data
Motif Finding: InterPro, Pfam Used for Next Generation Sequencing: Sequence Read Archive Used in Network Analysis: Metabolic Pathway Databases (KEGG, BioCyc)
Bioinformatics
Raw sequencing data from the project can be found in the NCBI Sequence Read Archive. Preliminary data has been presented at Genetics Society of America
Drosophila Genetic Reference Panel
Drosophila_Genetic_Reference_Panel
Inquiries into the origins of SARS-CoV-2
June 2021, the NIH announced that a set of sequence data had been removed from the Sequence Read Archive (SRA) in June 2020. The removal was performed
Origin_of_SARS-CoV-2
Species of bacterium
coverage. The GenBank master record can be found here, and the sequence read archive can be found here. Ivanova EP, Flavier S, Christen R. (2004). "Phylogenetic
Psychromonas_antarctica
determine which reads contain a specific 30-mer in the entire NCBI Sequence Read Archive? This task is similar to that which is accomplished by BLAST, however
Bloom filters in bioinformatics
Bloom_filters_in_bioinformatics
Open access DNA sequence database
in GenBank. Raw sequence reads generated by next-generation sequencing technologies are deposited in the Sequence Read Archive (SRA), rather than in GenBank
GenBank
databases, as they house original sequence data. They collaborate with Sequence Read Archive (SRA), which archives raw reads from high-throughput sequencing
List_of_biological_databases
but recently there are more and more metagenomic datasets in the Sequence Read Archive waiting for analysis with AMPHORA2. AmphoraNet is the web server
AMPHORA
Cross-database search engine for health sciences
abundance profiles GEO DataSets: experimental sets of GEO data Sequence read archive: high-throughput sequencing data Cancer Chromosomes: cytogenetic
Entrez
Numbers obtained by adding the two previous ones
Fibonacci sequence is a sequence in which each element is the sum of the two elements that precede it. Numbers that are part of the Fibonacci sequence are known
Fibonacci_sequence
Scientific instrument that automates the DNA sequencing process
T (thymine). This is then reported as a text string, called a read. Some DNA sequencers can be also considered optical instruments as they analyze light
DNA_sequencer
Process of determining the nucleic acid sequence
DNA sequencing is the process of determining the nucleic acid sequence – the order of nucleotides in DNA. It includes any method or technology that is
DNA_sequencing
Method of DNA sequence reconstruction
assembling sequencing reads to create full-length (sometimes novel) sequences, without using a template (see de novo sequence assemblers, de novo transcriptome
Sequence_assembly
Novel by Brandon Sanderson
for the Bondsmith spren. As with its Stormlight Archive predecessors, the unabridged audiobook is read by narration team Michael Kramer and Kate Reading
Rhythm_of_War
Science fiction series by Stephen Baxter
The Xeelee Sequence (/ˈziːliː/; ZEE-lee) is a series of hard science fiction novels, novellas, and short stories written by British author Stephen Baxter
Xeelee_Sequence
bioinformatics, a DNA read error occurs when a sequence assembler changes one DNA base for a different base. The reads from the sequence assembler can then
DNA_read_errors
Online database of integer sequences
The On-Line Encyclopedia of Integer Sequences (OEIS) is an online database of integer sequences. It was created and maintained by Neil Sloane while researching
On-Line Encyclopedia of Integer Sequences
On-Line_Encyclopedia_of_Integer_Sequences
Species of bacterium
C4625. https://www.ncbi.nlm.nih.gov/bioproject/433829. Link to NCBI sequence read archive (SRA) https://www.ncbi.nlm.nih.gov/sra?LinkName=biosample_sra&from_uid=8518548
Streptomyces_sp._myrophorea
Cycle through all length-k sequences
In combinatorial mathematics, a de Bruijn sequence of order n on a size-k alphabet A is a cyclic sequence in which every possible length-n string on A
De_Bruijn_sequence
American biologist
databases including GenBank, PubMed, PubMed Central, dbGaP, dbSNP, the Sequence Read Archive (SRA), RefSeq, PubChem, and many more. The internal research program
David_J._Lipman
2009 film by Tom Six
The Human Centipede (First Sequence) is a 2009 Dutch body horror film written, directed and co-produced by Tom Six. The independent film concerns a deranged
The Human Centipede (First Sequence)
The_Human_Centipede_(First_Sequence)
normal tissue by next-generation sequencing. SRA The Sequence Read Archive (SRA) stores raw sequence data from "next-generation" sequencing technologies
List of RNA-Seq bioinformatics tools
List_of_RNA-Seq_bioinformatics_tools
Method used for sequencing random DNA strands
of shotgun reads: In this extremely simplified example, none of the reads cover the full length of the original sequence, but the four reads can be assembled
Shotgun_sequencing
Database are derived from two archival databases at the NCBI: The Gene Expression Omnibus (GEO) and the Sequence Read Archive (SRA). The Gene Expression
NCBI_Epigenomics
Research data repository
Pediatric MRI Data Repository Archived 2019-01-10 at the Wayback Machine, dbGaP, dbVaR, and the Sequence Read Archive.[citation needed] 2008 and 2009
National Database for Autism Research
National_Database_for_Autism_Research
2011 film by Tom Six
The Human Centipede 2 (Full Sequence) is a 2011 psychological body horror film written, directed, and co-produced by Tom Six. An international co-production
The Human Centipede 2 (Full Sequence)
The_Human_Centipede_2_(Full_Sequence)
Bioinformatics software
to search through 10.2 petabases of sequencing data in the NCBI Sequence Read Archive, discovering 131,957 novel RNA virus species, thereby expanding
DIAMOND_(biotechnology)
Novel by Brandon Sanderson
contains a sequence of flashback chapters, this time from the perspective of Szeth, the Assassin in White. The unabridged audiobook is read by narration
Wind_and_Truth
Form of non-volatile memory used in computers and other electronic devices
Read-only memory (ROM) is a form of non-volatile memory used in computers and other electronic devices. Data stored in ROM cannot be electronically modified
Read-only_memory
Software in bioinformatics
in the assembly, and do not perform well on read sets that contain repeat regions. Early de novo sequence assemblers, such as SEQAID (1984) and CAP (1992)
De_novo_sequence_assemblers
File format for genomic variation data
genome sequences. The FASTQ format, used to represent DNA sequencer reads along with quality scores. The SAM format, used to represent genome sequencer reads
Variant_Call_Format
Special character sequences in the C programming language
console, and the inverse translation is done when text files are read. A hex escape sequence must have at least one hex digit following \x, with no upper
Escape_sequences_in_C
Trio of British comedians known for the TV series of the same name
I'm Sorry, I'll Read That Again, which also featured John Cleese, David Hatch and Jo Kendall, and lasted until 1973. I'm Sorry, I'll Read That Again resulted
The_Goodies
Process in bioinformatics that identifies equivalent sites within molecular sequences
alignment of a sequence to a reference by encoding a sequence of events (e.g. match/mismatch, insertions, deletions). Ref. : GTCGTAGAATA Read: CACGTAG—TA
Sequence_alignment
Acronym for rainbow colors
ROYGBIV is an acronym for the sequence of hues commonly described as making up a rainbow: red, orange, yellow, green, blue, indigo, and violet. There are
ROYGBIV
of probes of known sequence) on single DNA molecules in each read, and generating maps of the location of such events. Multiple reads can be assembled into
Positional_sequencing
American TV series
title sequence, which begins by breaking the fourth wall and asking the viewer to not use the "Skip Titles" function. The visuals of the title sequence change
Stuart Fails to Save the Universe
Stuart_Fails_to_Save_the_Universe
Succession of nucleotides in a nucleic acid
backbone. In the typical case, the sequences are printed abutting one another without gaps, as in the sequence AAAGTCTGAC, read left to right in the 5' to 3'
Nucleic_acid_sequence
Raw data of genome sequencing
specific information in the header section. Alignments—The read name, read sequence, read quality, alignment information, and custom tags are all included
BAM_(file_format)
Method used for display options on video text terminals
ANSI escape sequences are a standard for in-band signaling to control cursor location, color, font styling, and other options on video text terminals
ANSI_escape_code
File format for DNA or protein sequences
text-based format for representing either nucleotide sequences or amino acid (protein) sequences, in which nucleotides or amino acids are represented
FASTA_format
Mathematical model of computation
devices in modern society that perform a predetermined sequence of actions depending on a sequence of events with which they are presented. Simple examples
Finite-state_machine
2026 American reality comedy film
as well as brand new ones, and never-before-seen footage. The opening sequence begins in 1998 with a young Johnny Knoxville shooting himself in the chest
Jackass:_Best_and_Last
Sequence that reads the same forwards and backwards
palindrome (/ˈpælɪndroʊm/) is a word, number, phrase, or other sequence of symbols that reads the same backwards as forwards, such as madam or racecar, the
Palindrome
DNA or RNA sequence that matches its complement when read backwards
Palindromic sequences play an important role in molecular biology. Because a DNA sequence is double stranded, the base pairs are read, (not just the
Palindromic_sequence
and computational biology, Genome survey sequences (GSS) are nucleotide sequences similar to expressed sequence tags (ESTs) that the only difference is
Genome_survey_sequence
Infinite sequence in mathematics
Kolakoski sequence, sometimes also known as the Oldenburger–Kolakoski sequence, is an infinite sequence of symbols {1,2} that is the sequence of run lengths
Kolakoski_sequence
Sequence of DNA that determines traits in an organism
base pairing, the sequence of one strand completely specifies the sequence of its complement; hence only one strand needs to be read by the enzyme to produce
Gene
Opening sequence of The Simpsons
The Simpsons opening sequence is the title sequence of the American animated television series The Simpsons. It is accompanied by "The Simpsons Theme"
The_Simpsons_opening_sequence
2017 Marvel Studios film
Archived from the original on August 5, 2017. Retrieved August 4, 2017. "Spider-Man: Homecoming | Main on End Title Sequence". Perception. Archived from
Spider-Man:_Homecoming
2020 film by Christopher Nolan
magazine}}: CS1 maint: deprecated archival service (link) Sheperd, Jack (September 5, 2020). "Why you need to read about this historic, real-world puzzle
Tenet
Short sequence that appears after all or part of the final credits
thus teasing the release of Thor the following year. The post-credits sequence of Captain America: The Winter Soldier introduces the characters of Pietro
Post-credits_scene
Any of a set of standard configurations of Redundant Arrays of Independent Disks
protection against and recovery from hardware defects or defective sectors/read errors (hard errors), they do not provide any protection against data loss
Standard_RAID_levels
Methods of compressing data tailored specifically for genomic data
content (e.g., microsatellite sequences) or many sequences exhibit high levels of similarity (e.g., multiple genome sequences from the same species). Additionally
Compression of genomic sequencing data
Compression_of_genomic_sequencing_data
Natural number
). "Sequence A003617 (Smallest n-digit prime)". The On-Line Encyclopedia of Integer Sequences. OEIS Foundation. Sloane, N. J. A. (ed.). "Sequence A068093
1,000,000,000,000
utilizing long third generation sequencing reads, such as those obtained using the PacBio RS DNA sequencer. These sequences are, on average, 10,000–15,000 base
Hybrid_genome_assembly
List of people involved in the production of media
"Consider Yourself" sequence. Some opening credits are presented over the opening sequences of a film, rather than in a separate title sequence. The opening
Credits
Algorithm that generates an approximation of a random number sequence
generating a sequence of numbers whose properties approximate the properties of sequences of random numbers. The PRNG-generated sequence is not truly
Pseudorandom_number_generator
DNA sequencing using the concept of massively parallel processing
454 Life Sciences launched the GS20, the first NGS DNA sequencer. This system provided reads approximately 400–500 bp long with 99% accuracy, enabling
Massively_parallel_sequencing
Sequence of books
title and free-standing storyline, and can thus be read independently or out of sequence. A novel sequence contains story arcs or themes that cross over several
Book_series
Set of JSON communications profiles
does not produce a valid JSON object). IETF RFC 7464 defines a JSON text sequence as JSON texts each preceded by the ASCII record separator character and
JSON_streaming
Genre of card games
Ace to King) or descending sequence. Occasionally both are aimed at in the same game. The card starting the required sequence is known as the foundation
Solitaire
Discipline in genetics
short sequences (100 to 1000 base pairs), longer DNA sequences must be broken into random small segments which are then sequenced to obtain reads. Multiple
Genomics
2000 film by Christopher Nolan
different sequences of scenes interspersed during the film: a series in black-and-white that is shown chronologically, and a series of color sequences shown
Memento_(film)
block is actually considered as a fixed byte sequence: 0x52 0x61 0x72 0x21 0x1a 0x07 0x00 "RAR 5.0 archive format". Retrieved 2023-10-19. Tool Interface
List_of_file_signatures
words after Deputy Shettler, who led his firing squad, called out the sequence of commands preparatory to firing ("Ready, aim"). "So here it is at last
List of last words (20th century)
List_of_last_words_(20th_century)
Natural number
expansion, the result has the same six-digit repeating sequence after the decimal point, but the sequence can start with any of those six digits. In decimal
7
Early American electromechanical computer (1944)
The Harvard Mark I, or IBM Automatic Sequence Controlled Calculator (ASCC), was one of the earliest general-purpose electromechanical computers used in
Harvard_Mark_I
Series of fantasy novels for children by Susan Cooper
The Dark Is Rising Sequence is a series of five contemporary fantasy novels for older children and young adults that were written by the British author
The_Dark_Is_Rising_Sequence
1964 spy film by Guy Hamilton
extensive use of technology and gadgets by Bond, an extensive pre-credits sequence that stood largely alone from the main plot, multiple foreign locales and
Goldfinger_(film)
Annually recurring fixed sequence of Christian feast days
of saints, are to be observed, and which portions of scripture are to be read. Distinct liturgical colours may be used in connection with different seasons
Liturgical_year
Substrings of length k contained in a biological sequence
k} contained within a biological sequence. Primarily used within the context of computational genomics and sequence analysis, in which k-mers are composed
K-mer
"Exclusive: Thor: Ragnarok's post-credits sequence has an alternate version, says director Taika Waititi". Digital Spy. Archived from the original on October 20
Features of the Marvel Cinematic Universe
Features_of_the_Marvel_Cinematic_Universe
Epic poem attributed to Homer
any of the places visited by Odysseus are real. The events in the main sequence of the Odyssey (excluding Odysseus's embedded narrative of his wanderings)
Odyssey
2024 film by Coralie Fargeat
Persin and Fargeat conducted a technical read-through over several days, outlining the requirements of each sequence. Persin visualized Fargeat's ideas for
The_Substance
Family of DNA sequences found in prokaryotic organisms
repeats) is a family of DNA sequences found in the genomes of prokaryotic organisms such as bacteria and archaea. Each sequence within an individual prokaryotic
CRISPR
1973 thriller film directed by Fred Zinnemann
the opening sequence was not shot in the Élysée Palace courtyard but at the Hôtel de Soubise, the main office of the French National Archives. The two palaces
The_Day_of_the_Jackal_(film)
2019 Marvel Studios film
The film received positive reviews with praise for its humor, action sequences, visuals, and the performances of Holland and Gyllenhaal. It grossed $1
Spider-Man:_Far_From_Home
Lossless data compression algorithms
there exists finite lossless encoders for every sequence that achieve this bound as the length of the sequence grows to infinity. In this sense an algorithm
LZ77_and_LZ78
Increasing sequence of reduced fractions
proof, that each new term in a Farey sequence expansion is the mediant of its neighbours. Farey's letter was read by Cauchy, who provided a proof in his
Farey_sequence
Sequence of random variables
it read the elements in order. Instead they proposed a rule based on a partially computable process which having read any N elements of the sequence, decides
Random_sequence
1895 short story collection by Robert W. Chambers
Windus in 1895 (316 pages). The book contains nine short stories and a sequence of poems; while the first stories belong to the genres of supernatural
The_King_in_Yellow
Original video animation based on the manga of the same name by Hideyuki Kurata
Read or Die is an OVA based on the characters of the novels and manga of the same name by Hideyuki Kurata. It was released by Studio Deen from 2001 to
Read_or_Die_(OVA)
Creating sequence of numbers that cannot be predicted
process by which, often by means of a random number generator (RNG), a sequence of numbers or symbols is generated that cannot be reasonably predicted
Random_number_generation
2007 American film by Jason Reitman
Wal-Mart. The film was set out in a sequence of the year's seasons, which, Reitman said, "really resonated with me when I read it, because they mirror the three
Juno_(film)
2026 short film
as a SWAT team breaks into the room and surrounds her with cameras. The sequence transitions into "Good for the Soul", where Madonna appears in a forest
Confessions_II_(film)
Japanese anime television series
sequel to the Read or Die OVA. Its official title of R.O.D the TV is a catch-all acronym referring to the inclusion of characters from both Read or Die (the
R.O.D_the_TV
Act of playing a video game as quickly as possible
Speedrunning often involves following planned routes, which may incorporate sequence breaking and exploit glitches that allow sections to be skipped or completed
Speedrunning
CPU instruction to simultaneously read and write a value in memory
accessed in a read operation. This term is also associated with RAID levels that perform actual write operations as atomic read–modify–write sequences. Such RAID
Read–modify–write
SEQUENCE READ-ARCHIVE
SEQUENCE READ-ARCHIVE
SEQUENCE READ-ARCHIVE
SEQUENCE READ-ARCHIVE
SEQUENCE READ-ARCHIVE
SEQUENCE READ-ARCHIVE
SEQUENCE READ-ARCHIVE
SEQUENCE READ-ARCHIVE
SEQUENCE READ-ARCHIVE