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90 nucleotide RNA
RyhB RNA is a 90 nucleotide RNA that down-regulates a set of iron-storage and iron-using proteins when iron is limiting; it is itself negatively regulated
RyhB
RNA family
flexneri and Salmonella species. The molecular function of this RNA is unknown. RyhB RNA RyeB RNA RyeE RNA Wassarman KM, Repoila F, Rosenow C, Storz G, Gottesman
RydB_RNA
RNA family
expression of this operon is regulated by RyhB and iscR, a transcription repressor. Under sufficient iron conditions RyhB binds to iscRSUA mRNA and promotes
IscR_stability_element
Protein family
protein itself, its immediate downstream target is a noncoding RNA called RyhB. The Ferric Uptake Regulator protein functions in Gram-negative and Gram-positive
Ferric uptake regulator family
Ferric_uptake_regulator_family
RNA family
were identified in related Aggregatibacter. It is an analog to PrrF and RyhB RNAs. HrrF is maximally expressed when iron levels are low. Ferric uptake
HrrF_RNA
the well characterised sRNAs RprA and RyhB. Many of the sRNAs identified in this screen, including RprA, RyhB, SraB and SraL, are only expressed in the
Escherichia_coli_sRNA
RNA family
are encoded by all Pseudomonas species. The PrrF RNAs are analogs of the RyhB RNA, which is encoded by enteric bacteria. Expression of the PrrF RNAs is
PrrF_RNA
RNA family
OxyS RNA Qrr RNA RmA RNA RprA RNA RybB RNA RydC RNA RyeB RNA CyaR RNA RyeF RyhB RNA SgrS RNA Spot 42 RNA SraH RNA SraJ RNA SroB RNA / MicM RNA / RybC SroC
Hfq_binding_sRNA
RNA family
to detect and verify the additional targets ptsI, sdhA and yobF. RydB RNA RyhB RNA RyeB RNA Wassarman, KM; Repoila F; Rosenow C; Storz G; Gottesman S (2001)
RyeE_RNA
Species of bacterium
Bacterial small RNAs play important roles in many cellular processes. RnaG and RyhB sRNAs have been well studied in S. flexneri. Ssr1 sRNA, which could play
Shigella_flexneri
Non-coding RNA
validated their post-transcriptional control by SdsR/RyeB RNA. RydB RNA RyhB RNA RyeE RNA Wassarman KM, Repoila F, Rosenow C, Storz G, Gottesman S (July
RyeB_RNA
RNAs regulate gene expression by antisense interactions E.g. GcvB, OxyS and RyhB. The below table includes interactions that are not limited to UTRs. MicroRNAs
List of RNA structure prediction software
List_of_RNA_structure_prediction_software
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