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American scientific journal
Evolutionary Bioinformatics is a peer-reviewed open access scientific journal focusing on computational biology in the study of evolution. The journal
Evolutionary_Bioinformatics
Computational analysis of large, complex sets of biological data
definition placed bioinformatics as a field parallel to biochemistry (the study of chemical processes in biological systems). Bioinformatics and computational
Bioinformatics
Current Bioinformatics Database EMBnet.journal Evolutionary Bioinformatics GigaScience IEEE Transactions on Computational Biology and Bioinformatics Journal
List of bioinformatics journals
List_of_bioinformatics_journals
Event in which groups of software developers work at an accelerated pace
Phyloinformatics Hackathon: A Field Report." Evolutionary Bioinformatics Online 3: 287–296". Evolutionary Bioinformatics. 2007 (3). Sage Journals: 287–296. doi:10
Hackathon
Subset of evolutionary computation
ISBN 0-7803-8302-8. Fogel, Gary; Corne, David (2003). Evolutionary Computation in Bioinformatics. Elsevier. doi:10.1016/b978-1-55860-797-2.x5000-8.
Evolutionary_algorithm
Process in bioinformatics that identifies equivalent sites within molecular sequences
In bioinformatics, a sequence alignment is a way of arranging the sequences of DNA, RNA, or protein to identify regions of similarity that may be a consequence
Sequence_alignment
Canadian-Australian molecular biologist
of the inter-departmental Centre for Comparative Genomics and Evolutionary Bioinformatics (CGEB). Roger received his B.Sc from the University of British
Andrew_J._Roger
Institute of Bioinformatics is an academic not-for-profit foundation dedicated to biological and biomedical data science which federates bioinformatics activities
Swiss Institute of Bioinformatics
Swiss_Institute_of_Bioinformatics
Family of globular proteins
and Comparative Analysis of Albumin Family in Vertebrates". Evolutionary Bioinformatics Online. 13 1176934317716089. doi:10.1177/1176934317716089. PMC 5480655
Albumin
Spread of humans from Africa through the world
Garrett (2016). "Human Dispersal Out of Africa: A Lasting Debate". Evolutionary Bioinformatics. 11s2 (Suppl 2): 57–68. doi:10.4137/EBO.S33489. ISSN 1176-9343
Early_human_migrations
Branching diagram of evolutionary relationships between organisms
"Treevolution: visual analysis of phylogenetic trees". Bioinformatics. 25 (15): 1970–1971. doi:10.1093/bioinformatics/btp333. PMID 19470585. Labandeira, C. C.; Dilcher
Phylogenetic_tree
Large language family mostly of Southeast Asia and the Pacific
"The Austronesian Basic Vocabulary Database: From Bioinformatics to Lexomics". Evolutionary Bioinformatics. 4 EBO.S893. SAGE Publications: 271–283. doi:10
Austronesian_languages
Medical condition
"Molecular Evolution and Functional Divergence of the IgLON Family". Evolutionary Bioinformatics Online. 14 1176934318775081. doi:10.1177/1176934318775081. PMC 5967153
Anti-IgLON5_disease
Languages of the Negrito peoples of the Philippines
"The Austronesian Basic Vocabulary Database: From Bioinformatics to Lexomics". Evolutionary Bioinformatics. 4: 271–283. doi:10.4137/EBO.S893. PMC 2614200
Philippine_Negrito_languages
American bioinformatician and computational biologist
computational biologist whose work focuses on evolutionary genomics. He is Professor of Bioinformatics in the Department of Crop Sciences, University
Gustavo_Caetano-Anollés
Extinct Formosan language of northern Taiwan
"The Austronesian Basic Vocabulary Database: From Bioinformatics to Lexomics". Evolutionary Bioinformatics Online. 4: 271–283. doi:10.4137/ebo.s893. PMC 2614200
Basay_language
Population models of evolutionary algorithms
Solving the Temporal Dynamics of Gene Regulatory Networks". Evolutionary Bioinformatics. 14. doi:10.1177/1176934318767889. ISSN 1176-9343. PMC 5898668
Population model (evolutionary algorithm)
Population_model_(evolutionary_algorithm)
Overview of and topical guide to change in the heritable characteristics of organisms
of evolutionary biology Evolutionary Anthropology – Bimonthly review journal Evolutionary Bioinformatics – American scientific journal Evolutionary Psychology –
Outline_of_evolution
Paraphyletic class of tunicates comprising sea squirts
Reduced Complement of Genes Associated with Fanconi Anemia". Evolutionary Bioinformatics Online. 12: 133–148. doi:10.4137/EBO.S37920. PMC 4898443. PMID 27279728
Ascidiacea
Centre for research
Genetics (DNA Data Bank of Japan) Swiss Institute of Bioinformatics (SIB: Expasy) Australia Bioinformatics Resource BIG Data Center (National Genomics Data
European Bioinformatics Institute
European_Bioinformatics_Institute
Shamans of ethnic groups in the Philippines
"The Austronesian Basic Vocabulary Database: From Bioinformatics to Lexomics". Evolutionary Bioinformatics. 4 EBO.S893: 271–283. doi:10.4137/EBO.S893. PMC 2614200
Filipino_shamans
Biological evolution of Homo sapiens from 50,000 years ago until present
21, 2016). "Human Dispersal Out of Africa: A Lasting Debate". Evolutionary Bioinformatics. 11 (Suppl 2): 57–68. doi:10.4137/EBO.S33489. PMC 4844272. PMID 27127403
Recent_human_evolution
Kra–Dai language
"The Austronesian Basic Vocabulary Database: From Bioinformatics to Lexomics". Evolutionary Bioinformatics Online. 4: 271–283. doi:10.4137/ebo.s893. PMC 2614200
Lao_language
DNA analysis of Bulgarian populations
(January 2015). "Human Dispersal Out of Africa: A Lasting Debate". Evolutionary Bioinformatics. 11s2 (Suppl 2): 57–68. doi:10.4137/EBO.S33489. PMC 4844272.
Genetic_studies_on_Bulgarians
Infraclass of mammals in the clade Eutheria
(2025-11-19). "Completing a molecular timetree of Afrotheria". Frontiers in Bioinformatics. 5 1710926. doi:10.3389/fbinf.2025.1710926. ISSN 2673-7647. PMC 12672906
Placentalia
integrated software package for population genetics data analysis". Evolutionary Bioinformatics Online. 1: 47–50. ISSN 1176-9343. PMC 2658868. PMID 19325852
Arlequin_(software)
Software for understanding biological data
Machine learning in bioinformatics is the application of machine learning algorithms to bioinformatics, including genomics, proteomics, microarrays, systems
Machine learning in bioinformatics
Machine_learning_in_bioinformatics
Application of computational algorithms, methods and programs to phylogenetic analyses
"Maximum likelihood of evolutionary trees: hardness and approximation". Bioinformatics. 21 (Suppl 1): i97–106. doi:10.1093/bioinformatics/bti1027. PMID 15961504
Computational_phylogenetics
Protein family
Transport in Plants: A Revised Phylogeny of SNARE Proteins". Evolutionary Bioinformatics. 16 1176934320956575. doi:10.1177/1176934320956575. PMC 7573729
SNARE_protein
Study of evolutionary relationships between organisms
biology, phylogenetics (/ˌfaɪloʊdʒəˈnɛtɪks, -lə-/) is the study of the evolutionary history of life using observable characteristics of organisms (or genes)
Phylogenetics
Branch of biology
journals relevant to this field include Bioinformatics, Computers in Biology and Medicine, BMC Bioinformatics, Nature Methods, Nature Communications,
Computational_biology
Austronesian language spoken in Southeast Asia
The Austronesian Basic Vocabulary Database: From Bioinformatics to Lexomics. Evolutionary Bioinformatics, 4:271-283. Accessed July 28, 2026. I Capul, siray
Abaknon_language
Genetic technique for identifying organisms in mixed samples
Phylogenetic Relationships: Mammut Americanum, the Missing Outgroup". Evolutionary Bioinformatics. 3 117693430700300019: 45–51. doi:10.1177/117693430700300019
Metabarcoding
Model of changes in a sequence over evolutionary time
(July 2018). "An evolutionary model motivated by physicochemical properties of amino acids reveals variation among proteins". Bioinformatics. 34 (13): i350–i356
Substitution_model
Mathematical models of changing DNA
Nucleotide Sequence Data with Parallel Compositional Heterogeneity". Evolutionary Bioinformatics Online. 8 EBO.S9017: 357–371. doi:10.4137/EBO.S9017. PMC 3394461
Models_of_DNA_evolution
Open access academic journal publisher based in New Zealand
was established in late 2004 with the launch of two journals, Evolutionary Bioinformatics and Cancer Informatics. Additional journals have been published
Libertas_Academica
April 2016). "Human Dispersal Out of Africa: A Lasting Debate". Evolutionary Bioinformatics Online. 11 (Suppl 2) EBO.S33489: 57–68. doi:10.4137/EBO.S33489
Genetic_history_of_Africa
Scientific study of life
ecosystems. Subdisciplines include molecular biology, physiology, ecology, evolutionary biology, developmental biology, and systematics, among others. Each of
Biology
Measure of distance between atoms of superimposed proteins
similarity using root-mean-squared-distance" (PDF). Bioinformatics. 19 (5): 625–634. doi:10.1093/bioinformatics/btg035. PMID 12651721.{{cite journal}}: CS1 maint:
Root mean square deviation of atomic positions
Root_mean_square_deviation_of_atomic_positions
Matrix representing the frequency of evolution of a protein or nucleotide sequence
In bioinformatics and evolutionary biology, a substitution matrix describes the frequency at which a character in a nucleotide sequence or a protein sequence
Substitution_matrix
Sudden and large mutational change
specialization and victim mimicry can be cyclic and saltational. Evolutionary Bioinformatics Online. 2: 35-43. Syvanen, Michael; Kado, Clarence I. (2002)
Saltation_(biology)
Linguistics database
"The Austronesian Basic Vocabulary Database: from bioinformatics to lexomics". Evolutionary Bioinformatics. 4: 271–83. doi:10.4137/ebo.s893. PMC 2614200.
Austronesian Basic Vocabulary Database
Austronesian_Basic_Vocabulary_Database
Compilation of software used to produce phylogenetic trees
composition from multi-sample sequencing data". Bioinformatics. 31 (12): i62-70. doi:10.1093/bioinformatics/btv261. PMC 4542783. PMID 26072510. Kück P, Meid
List of phylogenetics software
List_of_phylogenetics_software
British botanist
letter writing to peas." Forsdyke, Donald R. (27 April 2016). Evolutionary Bioinformatics. Springer. ISBN 9783319287553. "War and peas- John Innes Centre-
Caroline_Pellew
Technique to deduce the time in prehistory when two or more life forms diverged
times in the absence of a molecular clock". Bioinformatics. 19 (2): 301–302. doi:10.1093/bioinformatics/19.2.301. PMID 12538260. O'Reilly JE, Dos Reis
Molecular_clock
American cytologist and zoologist (1874–1959)
Hist Philos Life Sci 2 :27-50. Forsdyke, Donald R. (2011). Evolutionary Bioinformatics. Springer. pp. 176-177. ISBN 978-1-4419-7770-0 Guyer, Michael
Michael_F._Guyer
Archaeological site in Bulgaria
(January 2015). "Human Dispersal Out of Africa: A Lasting Debate". Evolutionary Bioinformatics. 11s2 (Suppl 2): 57–68. doi:10.4137/EBO.S33489. PMC 4844272.
Bacho_Kiro_Cave
phylogenetic tree display and annotation" (PDF). Bioinformatics. 23 (1): 127–128. doi:10.1093/bioinformatics/btl529. ISSN 1367-4803. PMID 17050570. Archived
History_of_life
Bioinformatics tool
In bioinformatics, the BLOSUM (BLOcks SUbstitution Matrix) matrix is a substitution matrix used for sequence alignment of proteins. BLOSUM matrices are
BLOSUM
Similar DNA, RNA or protein sequences within genomes or among species
overlaps with the fields of genomics, proteomics, evolutionary biology, phylogenetics, bioinformatics and mathematics. The discovery of the role of DNA
Conserved_sequence
Method of selection in selective breeding
Truncation selection is a selection method in selective breeding and in evolutionary algorithms from computer science, which selects a certain share of fittest
Truncation_selection
revisiting the Salmonella pathogenicity islands". Bioinformatics. 22 (18): 2196–203. doi:10.1093/bioinformatics/btl369. PMID 16837528. Hooper SD, Berg OG (March
Inferring horizontal gene transfer
Inferring_horizontal_gene_transfer
Conferences on bioinformatics and computational biology: CIBB - International Conference on Computational Intelligence Methods for Bioinformatics and Biostatistics
List of computer science conferences
List_of_computer_science_conferences
Integrative bioinformatics is a discipline of bioinformatics that focuses on problems of data integration for the life sciences. With the rise of high-throughput
Integrative_bioinformatics
Interactions with artificial intelligence
Bayesian networks Evolutionary algorithms Neuro-symbolic AI Systems integration Open-source AI data centers Applications Art Music Bioinformatics Deepfake Earth
Human–AI_interaction
Interaction of bacteriophages with their environments
doi:10.1038/s41467-024-46489-0. ISSN 2041-1723. PMC 10924106. "Evolutionary Bioinformatics Online 2005". Libertas Academica. Archived from the original
Phage_ecology
Species of fish
Species Identification and Recombinant Mitochondrial Genome". Evolutionary Bioinformatics Online. 13 1176934317726783. doi:10.1177/1176934317726783. ISSN 1176-9343
Salvelinus_czerskii
"FYPO: the fission yeast phenotype ontology". Bioinformatics. 29 (13): 1671–8. doi:10.1093/bioinformatics/btt266. PMC 3694669. PMID 23658422. Hoehndorf
List of OBO Foundry ontologies
List_of_OBO_Foundry_ontologies
Bioinformatics subfield
Structural bioinformatics is the branch of bioinformatics that is related to the analysis and prediction of the three-dimensional structure of biological
Structural_bioinformatics
phylogenetic tree display and annotation" (PDF). Bioinformatics. 23 (1): 127–8. doi:10.1093/bioinformatics/btl529. PMID 17050570. Letunic, I; Bork, P (2011)
Evolution of sexual reproduction
Evolution_of_sexual_reproduction
Bioinformatics technique
prediction using the Protein Link EXplorer (PLEX)". Bioinformatics. 21 (10): 2558–2559. doi:10.1093/bioinformatics/bti313. ISSN 1367-4803. PMID 15701682. Chen
Phylogenetic_profiling
Ireland to set up the Bioinformatics Research Group at NUI Maynooth and became the Director of the Genetics and Bioinformatics degree course. In 2012-2013
James_O._McInerney
Alignment of more than two molecular sequences
scalability to very large alignment problems". Bioinformatics. 20 (10): 1546–56. doi:10.1093/bioinformatics/bth126. PMID 14962922. Hughey R, Krogh A. SAM:
Multiple_sequence_alignment
Austronesian language spoken in Kalimantan, Indonesia
(2008). The Austronesian Basic Vocabulary Database: From Bioinformatics to Lexomics. Evolutionary Bioinformatics, 4:271-283. Accessed July 28, 2026. v t e
Tunjung_language
phylogeographic information on phylogenetic trees". Bioinformatics. 35 (17): 3163–3165. doi:10.1093/bioinformatics/btz011. PMID 30649190. Archived from the original
List of phylogenetic tree visualization software
List_of_phylogenetic_tree_visualization_software
Type of biological prediction
predicting beta-turn using support vector machine". Bioinformatics. 21 (10): 2370–4. doi:10.1093/bioinformatics/bti358. PMID 15797917. Zimmermann O, Hansmann
Protein_structure_prediction
Concept of open-source software applied to AI
Bayesian networks Evolutionary algorithms Neuro-symbolic AI Systems integration Open-source AI data centers Applications Art Music Bioinformatics Deepfake Earth
Open-source artificial intelligence
Open-source_artificial_intelligence
Nature. "Nick Goldman". European Bioinformatics Institute. Retrieved 8 April 2019. "Goldman group". European Bioinformatics Institute. Retrieved 8 April 2019
Nick_Goldman
Science regarding functions in organisms or living systems
interact with the environment to influence an organism's phenotype. Evolutionary biology is the study of the processes that have led to the diversity
Physiology
Methods in artificial intelligence research
neural-symbolic systems have been applied to a number of problems in the areas of bioinformatics, control engineering, software verification and adaptation, visual intelligence
Symbolic artificial intelligence
Symbolic_artificial_intelligence
Branch of bioinformatics
mechanisms of genes. Structural bioinformatics: Sequence alignment visualization is integral to structural bioinformatics, where researchers analyze protein
Biological_data_visualization
Extrapolation method to detect common ancestors
"Count: evolutionary analysis of phylogenetic profiles with parsimony and likelihood". Bioinformatics. 26 (15): 1910–1912. doi:10.1093/bioinformatics/btq315
Ancestral_reconstruction
RNA family
Genomics of Purine Riboswitch Distribution in Prokaryotes". Evolutionary Bioinformatics. 8 EBO.S10048: 589–609. doi:10.4137/EBO.S10048. PMC 3499989.
Purine_riboswitch
Species of maple
Likelihood, Splits Graphs, and Motif Analysis of 606 Sequences". Evolutionary Bioinformatics. 2: 7–22. doi:10.1177/117693430600200014. PMC 2674679. PMID 19455198
Acer_nipponicum
Type of protein fold that makes a trefoil knot
JM. (2007). Structural and evolutionary bioinformatics of the SPOUT superfamily of methyltransferases. BMC Bioinformatics. 8:73 This article incorporates
Trefoil_knot_fold
Field of biological research
SynMap3D: web-based whole-genome synteny browsers". Bioinformatics. 33 (14): 2197–2198. doi:10.1093/bioinformatics/btx144. PMID 28334338. Lin HN, Hsu WL (February
Comparative_genomics
Study of developmental programs and patterns in plants from an evolutionary perspective
Evolutionary developmental biology (evo-devo) is the study of developmental programs and patterns from an evolutionary perspective. It seeks to understand
Plant evolutionary developmental biology
Plant_evolutionary_developmental_biology
Graph used to visualize evolutionary relationships, including reticulation events
similarity and detecting recombination". Bioinformatics. 38 (11): 3118–3120. arXiv:2112.09755. doi:10.1093/bioinformatics/btac287. PMID 35451456. Makarenkov
Phylogenetic_network
American biologist
served on the editorial board of Bioinformatics from 1999 until 2001. Koonin is also an advisory board member in bioinformatics at Faculty of 1000. In 2016
Eugene_Koonin
List of concepts in artificial intelligence
learning, pattern recognition, image analysis, information retrieval, bioinformatics, data compression, and computer graphics. Cobweb An incremental system
Glossary of artificial intelligence
Glossary_of_artificial_intelligence
2023 letter calling for a pause on AI system training
Bayesian networks Evolutionary algorithms Neuro-symbolic AI Systems integration Open-source AI data centers Applications Art Music Bioinformatics Deepfake Earth
Pause Giant AI Experiments: An Open Letter
Pause_Giant_AI_Experiments:_An_Open_Letter
Generative encoding that evolves artificial neural networks
(2002-06-01). "Evolving Neural Networks through Augmenting Topologies". Evolutionary Computation. 10 (2): 99–127. CiteSeerX 10.1.1.638.3910. doi:10.1162/106365602320169811
HyperNEAT
Scientific study of animals
amount of work has been done using computer science techniques such as bioinformatics and computational biology. Molecular genetics, the study of gene structure
Zoology
Computer-automated design Bioinformatics Multiple Sequence Alignment Bioinformatics: RNA structure prediction Bioinformatics: Motif Discovery Biology and
List of genetic algorithm applications
List_of_genetic_algorithm_applications
Virus classification system made by David Baltimore
Institute of Bioinformatics. Retrieved 6 August 2020. "dsDNA Rolling Circle Replication". ViralZone. Swiss Institute of Bioinformatics. Retrieved 6 August
Baltimore_classification
Form of artificial intelligence
or neuro-evolution, is a form of artificial intelligence that uses evolutionary algorithms to generate artificial neural networks (ANN), parameters,
Neuroevolution
AI benchmark testbed for mathematical problem solving
Bayesian networks Evolutionary algorithms Hybrid intelligent systems Systems integration Open-source AI data centers Applications Bioinformatics Deepfake Earth
FrontierMath
Succession of nucleotides in a nucleic acid
algorithm for calculating linguistic complexity". Bioinformatics. 18 (5): 679–88. doi:10.1093/bioinformatics/18.5.679. PMID 12050064. Wikimedia Commons has
Nucleic_acid_sequence
American computational biologist and researcher
Research Service in the Genomics and Bioinformatics Research Unit. Her current research focus involves utilizing bioinformatics to enhance ARS breeding programs
Amanda_M._Hulse-Kemp
subfield of bioinformatics that uses computational tools to process and analyze genomic information through databases, algorithms, and bioinformatics applications
Genome_informatics
Dutch biophysicist
interconnected levels. In 1970, together with Ben Hesper, she defined the term bioinformatics as "the study of informatic processes in biotic systems". Born in Amsterdam
Paulien_Hogeweg
Principle in artificial intelligence
Bayesian networks Evolutionary algorithms Neuro-symbolic AI Systems integration Open-source AI data centers Applications Art Music Bioinformatics Deepfake Earth
Bitter_lesson
Software for statistical analysis of molecular evolution
Jakobsen, and M. Nei (2001) MEGA2: Molecular Evolutionary Genetics Analysis. Ver. 2.0, Bioinformatics 17:1244-1245. Tamura, K., Stecher, G., Peterson
Molecular Evolutionary Genetics Analysis
Molecular_Evolutionary_Genetics_Analysis
Margaret Oakley Dayhoff (1925–1983), American biochemist, pioneer in bioinformatics. Pierre Antoine Delalande (1787–1823), French naturalist employed by
List_of_biologists
Problem easily dividable into parallel tasks
2003). "Parallel BLAST on split databases". Bioinformatics. 19 (14): 1865–6. doi:10.1093/bioinformatics/btg250. PMID 14512366. How we made our face recognizer
Embarrassingly_parallel
List of standard rules to translate DNA encoded information into proteins
table displays these alternative codons. Biology portal Evolutionary biology portal Bioinformatics List of genetic codes Each stop codon has a specific name:
DNA_and_RNA_codon_tables
German bioinformatician and evolutionary biologist
and evolutionary biologist. He is the scientific director of the Max F. Perutz Laboratories at the Vienna Biocenter and a professor of bioinformatics at
Arndt_von_Haeseler
Concept in artificial intelligence
training processes. In May 2025, Google DeepMind unveiled AlphaEvolve, an evolutionary coding agent that uses a LLM to design and optimize algorithms. Starting
Recursive_self-improvement
Linguistics database
Lexibank is a linguistics database managed by the Max Planck Institute for Evolutionary Anthropology in Leipzig, Germany. The database consists of over 100 standardized
Lexibank
stochastic context-free grammars and evolutionary history". Bioinformatics. 15 (6): 446–454. doi:10.1093/bioinformatics/15.6.446. PMID 10383470. Knudsen B
List of RNA structure prediction software
List_of_RNA_structure_prediction_software
EVOLUTIONARY BIOINFORMATICS
EVOLUTIONARY BIOINFORMATICS
EVOLUTIONARY BIOINFORMATICS
EVOLUTIONARY BIOINFORMATICS
EVOLUTIONARY BIOINFORMATICS
EVOLUTIONARY BIOINFORMATICS
EVOLUTIONARY BIOINFORMATICS
EVOLUTIONARY BIOINFORMATICS
EVOLUTIONARY BIOINFORMATICS